LINC00868 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 868

GC17P076850
GIFtS:
13
See more...

Aliases for LINC00868 Gene

Data sources for LINC00868 Gene:

Subcategory (RNA class) for LINC00868 Gene

lncRNA

Aliases for LINC00868 Gene

External Ids for LINC00868 Gene

Previous HGNC Symbols for LINC00868 Gene

  • C17orf52

Previous GeneCards Identifiers for LINC00868 Gene

  • GC17P074848

Summaries for LINC00868 Gene

GeneCards Summary for LINC00868 Gene

LINC00868 (Long Intergenic Non-Protein Coding RNA 868) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00868 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00868 Gene

Genomics for LINC00868 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00868 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J076845 Enhancer 1 Ensembl ENCODE 7.2 +14.8 14833 2.1 IKZF1 BHLHE40 TAL1 TAF9B MYNN FOSL1 HLTF ATF1 SMARCA4 HDAC2 MGAT5B LINC00868 MFSD11 MXRA7 ENSG00000287836 HSALNG0118881 SRSF2
GH17J076850 Enhancer 0.4 Ensembl 6.6 +20.3 20294 0.6 ZBTB33 NRF1 SOX13 HSALNG0118881 LINC00868 ENSG00000287836 MGAT5B SRSF2
GH17J076826 Enhancer 0.3 Ensembl 5.6 -3.5 -3506 1 REST MXRA7 RNU6-97P LINC00868 LOC107985089 lnc-MGAT5B-1 MGAT5B SRSF2
GH17J076839 Promoter/Enhancer 1.2 Ensembl ENCODE 0.4 +9.8 9817 0.8 IRF2 CTCF THAP11 SIN3A REST FOXA2 ZNF511 TRIM22 SAP130 ZEB2 ENSG00000287836 HSALNG0118880 piR-42694-068 MGAT5B MXRA7 MFSD11 LINC00868 SRSF2
GH17J076841 Promoter/Enhancer 1 Ensembl ENCODE 0.4 +11.8 11777 1.6 IKZF1 ZIC2 TAL1 ZNF48 ZNF652 GLIS1 RCOR1 ZNF398 SP7 GATA2 ENSG00000287836 ENSG00000267342 SRSF2 TRIM65 CDK3 MGAT5B SRP68 METTL23 ENSG00000267546 PRPSAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00868 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00868 Gene

Latest Assembly
chr17:76,830,207-76,861,953
(GRCh38/hg38)
Size:
31,747 bases
Orientation:
Plus strand

Previous Assembly
chr17:74,852,248-74,857,918
(GRCh37/hg19 by Entrez Gene)
Size:
5,671 bases
Orientation:
Plus strand

chr17:74,846,258-74,857,918
(GRCh37/hg19 by Ensembl)
Size:
11,661 bases
Orientation:
Plus strand

Genomic View for LINC00868 Gene

Genes around LINC00868 on UCSC Golden Path with GeneCards custom track
LINC00868 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00868 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00868 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00868 Gene

Proteins for LINC00868 Gene

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  3. Assay products for research

Post-translational modifications for LINC00868 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00868 Gene

Domains & Families for LINC00868 Gene

Gene Families for LINC00868 Gene

HGNC:
genes like me logo Genes that share domains with LINC00868: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00868 Gene

Function for LINC00868 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

CRISPR products for research

Inhibitory RNAs for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00868 Gene

Localization for LINC00868 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00868 Gene

Pathways & Interactions for LINC00868 Gene

PathCards logo

SuperPathways for LINC00868 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00868 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00868 Gene

Drugs & Compounds for LINC00868 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC00868 Gene

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  2. miRNA products for research
  3. Inhibitory RNAs for research
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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00868 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000407C1B_9606 lncRNA 550 4

Ensembl: ENST00000589708 (view in UCSC) ,

LncBook: HSALNT0245520,

LNCipedia: LINC00868:4,

NONCODE: NONHSAT056094.2,

URS00002AE404_9606 lncRNA 459 3

Ensembl: ENST00000589914 (view in UCSC) ,

LNCipedia: LINC00868:5,

NONCODE: NONHSAT056095.2,

URS000028677C_9606 lncRNA 853 2

Ensembl: ENST00000592919 (view in UCSC) ,

LNCipedia: LINC00868:3,

URS0000A76558_9606 lncRNA 549 2

RefSeq: NR_135283,

LNCipedia: LINC00868:6,

URS0000A76DAA_9606 lncRNA 460 2

RefSeq: NR_135284,

LNCipedia: LINC00868:7,

LINC00868 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00868 Gene

3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00868 Gene

No ASD Table

Relevant External Links for LINC00868 Gene

GeneLoc Exon Structure for
LINC00868

Expression for LINC00868 Gene

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  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00868 Gene

mRNA expression in normal human tissues for LINC00868 Gene
mRNA expression by GTEx for LINC00868 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00868 Gene

This gene is overexpressed in Testis (x32.7) and Skin - Not Sun Exposed (Suprapubic) (x5.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00868

SOURCE GeneReport for Unigene cluster for LINC00868 Gene:

Hs.645372
genes like me logo Genes that share expression patterns with LINC00868: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00868 Gene

Orthologs for LINC00868 Gene

Evolution for LINC00868 Gene

ENSEMBL:
Gene Tree for LINC00868 (if available)
TreeFam:
Gene Tree for LINC00868 (if available)

No data available for Orthologs for LINC00868 Gene

Paralogs for LINC00868 Gene

No data available for Paralogs for LINC00868 Gene

Variants for LINC00868 Gene

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  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00868 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC00868 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00868

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00868 Gene

Disorders for LINC00868 Gene

Additional Disease Information for LINC00868

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for LINC00868 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00868 Gene

Publications for LINC00868 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

ExternalLinks

View latest publications for LINC00868 gene in Mastermind

Products for LINC00868 Gene

Sources for LINC00868 Gene