Aliases for LINC00866 Gene

Subcategory (RNA class) for LINC00866 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00866 Gene

  • Long Intergenic Non-Protein Coding RNA 866 2 3 5
  • LINC00866 2 168
  • NONHSAG006642 92
  • HSALNG0079981 167

External Ids for LINC00866 Gene

Previous GeneCards Identifiers for LINC00866 Gene

  • GC10M099590

Summaries for LINC00866 Gene

GeneCards Summary for LINC00866 Gene

LINC00866 (Long Intergenic Non-Protein Coding RNA 866) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00866 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00866 Gene

Genomics for LINC00866 Gene

GeneHancer (GH) Regulatory Elements for LINC00866 Gene

Promoters and enhancers for LINC00866 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J097848 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 500.7 -1.2 -1206 4.4 ZNF217 REST ZBTB26 ZBTB25 GATAD2B CTBP1 ZNF341 EZH2 HCFC1 SP2 GOLGA7B LINC00866 lnc-CRTAC1-2 lnc-GOLGA7B-1
GH10J097837 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +10.9 10897 6.2 CTCF TCF12 RBAK JUND FOS ZBTB11 AFF1 REST TOE1 MYC piR-40459 SFRP5 CRTAC1 GOLGA7B piR-39488-046 piR-55281-062 piR-56022-052 piR-56088-003 LINC00866 lnc-GOLGA7B-2
GH10J097842 Enhancer 0.6 Ensembl 0.4 +6.8 6821 1.6 CREB1 GATA3 REST ZBTB48 NR2F1 ZBTB21 ZNF366 GATA2 NR3C1 ZNF629 piR-39488-046 piR-61029-021 piR-55281-062 piR-56022-052 piR-56088-003 CRTAC1 GOLGA7B lnc-CRTAC1-2 LINC00866
GH10J097827 Enhancer 0.6 Ensembl dbSUPER 0.4 +20.8 20797 3.2 ZIC2 CTCF KLF1 EGR2 GATA2 GOLGA7B SFRP5 CRTAC1 ZFYVE27 lnc-GOLGA7B-2 piR-40459 lnc-GOLGA7B-3 LINC00866
GH10J097830 Enhancer 0.2 Ensembl 0.4 +18.7 18697 0.6 SFRP5 CRTAC1 lnc-GOLGA7B-2 piR-40459 LINC00866 lnc-GOLGA7B-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00866 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00866 Gene

Genomic Locations for LINC00866 Gene
chr10:97,828,478-97,849,798
(GRCh38/hg38)
Size:
21,321 bases
Orientation:
Minus strand
chr10:99,588,235-99,609,555
(GRCh37/hg19)
Size:
21,321 bases
Orientation:
Minus strand

Genomic View for LINC00866 Gene

Genes around LINC00866 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00866 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00866 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00866 Gene

Proteins for LINC00866 Gene

Post-translational modifications for LINC00866 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00866 Gene

Domains & Families for LINC00866 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00866 Gene

Function for LINC00866 Gene

Phenotypes From GWAS Catalog for LINC00866 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00866 Gene

Localization for LINC00866 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00866 Gene

Pathways & Interactions for LINC00866 Gene

PathCards logo

SuperPathways for LINC00866 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00866 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00866 Gene

Drugs & Compounds for LINC00866 Gene

No Compound Related Data Available

Transcripts for LINC00866 Gene

mRNA/cDNA for LINC00866 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00866 Gene

No ASD Table

Relevant External Links for LINC00866 Gene

GeneLoc Exon Structure for
LINC00866

Expression for LINC00866 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00866 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00866 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.4), Pituitary (x4.5), and Brain - Cerebellum (x4.1).

SOURCE GeneReport for Unigene cluster for LINC00866 Gene:

Hs.351904
genes like me logo Genes that share expression patterns with LINC00866: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00866 Gene

Orthologs for LINC00866 Gene

Evolution for LINC00866 Gene

ENSEMBL:
Gene Tree for LINC00866 (if available)
TreeFam:
Gene Tree for LINC00866 (if available)

No data available for Orthologs for LINC00866 Gene

Paralogs for LINC00866 Gene

No data available for Paralogs for LINC00866 Gene

Variants for LINC00866 Gene

Additional dbSNP identifiers (rs#s) for LINC00866 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00866 Gene

Variant ID Type Subtype PubMed ID
esv2739940 CNV deletion 23290073
esv2739951 CNV deletion 23290073
esv3546731 CNV deletion 23714750
nsv1045435 CNV gain 25217958
nsv1047572 CNV gain 25217958
nsv1069508 CNV deletion 25765185
nsv1112594 CNV deletion 24896259
nsv1135777 CNV deletion 24896259
nsv951000 CNV deletion 24416366

Additional Variant Information for LINC00866 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00866

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00866 Gene

Disorders for LINC00866 Gene

Additional Disease Information for LINC00866

No disorders were found for LINC00866 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00866 Gene

Publications for LINC00866 Gene

No publications were found for LINC00866 Gene.

No data available for Mastermind for LINC00866 Gene

Products for LINC00866 Gene

Sources for LINC00866 Gene