Aliases for LINC00865 Gene

Subcategory (RNA class) for LINC00865 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00865 Gene

  • Long Intergenic Non-Protein Coding RNA 865 2 3 5
  • LINC00865 2 5 165
  • NONHSAG006492.2 91
  • HSALNG0079601 164
  • HCG2024094 3

External Ids for LINC00865 Gene

Previous GeneCards Identifiers for LINC00865 Gene

  • GC10P091593

Summaries for LINC00865 Gene

GeneCards Summary for LINC00865 Gene

LINC00865 (Long Intergenic Non-Protein Coding RNA 865) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00865 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00865 Gene

Genomics for LINC00865 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00865 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J089829 Promoter 0.6 EPDnew 608.3 +10.0 10047 0.1 NRF1 NFE2 NR2F1 NR2F6 EMSY LINC00865 LOC105378424 piR-35293 lnc-PANK1-3 piR-46322 KIF20B
GH10J089836 Promoter/Enhancer 0.8 ENCODE CraniofacialAtlas 56.9 +18.1 18100 1.9 FOXA1 ZFX NR2C2 CTCF NR2F1 YY1 MARK2P16 piR-36688 piR-31406 piR-39844 lnc-PANK1-6 piR-35157 piR-35619 piR-46293 piR-56044 piR-52944
GH10J089641 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 18.8 -174.8 -174768 5.7 CEBPG SP1 GATAD2A PRDM10 REST ZNF629 TFE3 SOX13 NFKBIZ ZNF692 PANK1 ENSG00000249962 ENSG00000232936 LOC105378421 lnc-SLC16A12-1 ENSG00000235100 LINC00865 ENSG00000240996 KIF20B ENSG00000225836
GH10J089700 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 18.8 -117.3 -117289 3.6 SP1 CREB1 PRDM10 REST ZNF629 IKZF1 CTCF ZNF692 POLR2A BACH1 KIF20B ENSG00000235100 LINC00865 ENSG00000240996 PANK1 NONHSAG006490.2
GH10J089831 Enhancer 0.5 Ensembl 52.7 +11.4 11411 0.2 ZNF316 MAFF MAFK MAFG EMSY LOC105378424 lnc-PANK1-3 piR-35293 LINC00865 KIF20B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00865 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00865 Gene

Genomic Locations for LINC00865 Gene
chr10:89,819,490-89,840,865
(GRCh38/hg38)
Size:
21,376 bases
Orientation:
Plus strand
chr10:91,589,250-91,600,618
(GRCh37/hg19)
Size:
11,369 bases
Orientation:
Plus strand

Genomic View for LINC00865 Gene

Genes around LINC00865 on UCSC Golden Path with GeneCards custom track
LINC00865 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00865 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00865 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00865 Gene

Proteins for LINC00865 Gene

Post-translational modifications for LINC00865 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00865 Gene

Domains & Families for LINC00865 Gene

Gene Families for LINC00865 Gene

genes like me logo Genes that share domains with LINC00865: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00865 Gene

Function for LINC00865 Gene

Phenotypes From GWAS Catalog for LINC00865 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00865 Gene

Localization for LINC00865 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00865 Gene

Pathways & Interactions for LINC00865 Gene

PathCards logo

SuperPathways for LINC00865 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00865 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00865 Gene

Drugs & Compounds for LINC00865 Gene

No Compound Related Data Available

Transcripts for LINC00865 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00865 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002EF0A4_9606 lncRNA 4272 3

Ensembl: ENST00000448963 (view in UCSC) ,

LncBook: HSALNT0166132,

LNCipedia: LINC00865:4,

URS00004F01E2_9606 lncRNA 3891 3

Ensembl: ENST00000448490 (view in UCSC) ,

LNCipedia: LINC00865:5,

NONCODE: NONHSAT015547.2,

URS000075A40C_9606 lncRNA 4289 2

HGNC: 45170,

RefSeq: NR_038382,

URS0000EEEDC5_9606 lncRNA 1241 1

Ensembl: ENST00000670043 (view in UCSC) ,

URS0000EF155B_9606 lncRNA 1213 1

Ensembl: ENST00000667153 (view in UCSC) ,

LINC00865 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00865 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00865 Gene

No ASD Table

Relevant External Links for LINC00865 Gene

GeneLoc Exon Structure for
LINC00865

Expression for LINC00865 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00865 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00865 Gene

This gene is overexpressed in Bladder (x12.6) and Testis (x7.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00865

SOURCE GeneReport for Unigene cluster for LINC00865 Gene:

Hs.618956
genes like me logo Genes that share expression patterns with LINC00865: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00865 Gene

Orthologs for LINC00865 Gene

Evolution for LINC00865 Gene

ENSEMBL:
Gene Tree for LINC00865 (if available)
TreeFam:
Gene Tree for LINC00865 (if available)

No data available for Orthologs for LINC00865 Gene

Paralogs for LINC00865 Gene

No data available for Paralogs for LINC00865 Gene

Variants for LINC00865 Gene

Additional dbSNP identifiers (rs#s) for LINC00865 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00865 Gene

Variant ID Type Subtype PubMed ID
esv3624166 CNV loss 21293372
esv3624167 CNV loss 21293372
esv3624169 CNV loss 21293372
nsv1036581 CNV gain 25217958
nsv1043571 CNV loss 25217958
nsv551874 CNV loss 21841781

Additional Variant Information for LINC00865 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00865

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00865 Gene

Disorders for LINC00865 Gene

No disorders were found for LINC00865 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00865 Gene

Publications for LINC00865 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for LINC00865 Gene

Sources for LINC00865 Gene