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Aliases for LINC00857 Gene
Subcategory (RNA class) for LINC00857 Gene
lncRNA
Number of RNA Genes sources:
4 / 17
Aliases for LINC00857 Gene
External Ids for LINC00857 Gene
- HGNC: 45114
- Entrez Gene: 439990
- Ensembl: ENSG00000237523
Previous GeneCards Identifiers for LINC00857 Gene
- GC10P081968
- GC10P080207
- GC10P082160
- GC10P083200
Summaries for LINC00857 Gene
GeneCards Summary for LINC00857 Gene
LINC00857 (Long Intergenic Non-Protein Coding RNA 857) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00857 include Lung Cancer and Large Cell Medulloblastoma.
Additional gene information for LINC00857 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00857 Gene
Genomics for LINC00857 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00857 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00857 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00857 Gene
Genomic Locations for LINC00857 Gene
- chr10:80,206,672-80,229,592
- (GRCh38/hg38)
- Size:
- 22,921 bases
- Orientation:
- Plus strand
- chr10:81,967,466-81,979,413
- (GRCh37/hg19)
- Size:
- 11,948 bases
- Orientation:
- Plus strand
Genomic View for LINC00857 Gene
Genes around LINC00857 on UCSC Golden Path with GeneCards custom track
LINC00857 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 10q22.3 by HGNC
- 10q22.3 by Entrez Gene
- 10q22.3 by Ensembl
LINC00857 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00857 Gene
Proteins for LINC00857 Gene
Post-translational modifications for LINC00857 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00857
- Origene Custom Protein Services for LINC00857
No data available for DME Specific Peptides for LINC00857 Gene
Domains & Families for LINC00857 Gene
Gene Families for LINC00857 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00857 Gene
Function for LINC00857 Gene
Phenotypes From GWAS Catalog for LINC00857 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC00857
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00857 Gene
Localization for LINC00857 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00857 Gene
Transcripts for LINC00857 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00857 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000024EAD0_9606 | lncRNA | 2161 | 3 |
Ensembl: ENST00000422847 (view in UCSC) , LNCipedia: LINC00857:1, NONCODE: NONHSAT015237.2, |
| URS00003DD174_9606 | lncRNA | 629 | 3 |
Ensembl: ENST00000432308 (view in UCSC) , LNCipedia: LINC00857:2, NONCODE: NONHSAT015238.2, |
| URS000075AEB1_9606 | lncRNA | 2161 | 2 |
HGNC: 45114, RefSeq: NR_038464, |
| URS0000EF0A52_9606 | lncRNA | 2459 | 1 |
Ensembl: ENST00000660450 (view in UCSC) , |
| URS0000EF2CCA_9606 | lncRNA | 2237 | 1 |
Ensembl: ENST00000671081 (view in UCSC) , |
LINC00857 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00857 Gene
- 3 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC00857
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC00857 Gene
- GeneLoc Exon Structure for
- LINC00857
Expression for LINC00857 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00857
SOURCE GeneReport for Unigene cluster for LINC00857 Gene:
Hs.365566Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00857 Gene
Orthologs for LINC00857 Gene
No data available for Orthologs for LINC00857 Gene
Paralogs for LINC00857 Gene
No data available for Paralogs for LINC00857 Gene
Variants for LINC00857 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv15e203 | CNV | loss | 21179565 |
| esv3623948 | CNV | loss | 21293372 |
| esv3623949 | CNV | gain | 21293372 |
| nsv1141879 | OTHER | inversion | 24896259 |
| nsv551635 | CNV | loss | 21841781 |
| nsv948100 | CNV | duplication | 23825009 |
Additional Variant Information for LINC00857 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00857
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00857 Gene
Disorders for LINC00857 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| lung cancer |
|
|
| large cell medulloblastoma |
|
|
Search LINC00857 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC00857
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00857 Gene
Publications for LINC00857 Gene
- Long non-coding RNA HUMT hypomethylation promotes lymphangiogenesis and metastasis via activating FOXK1 transcription in triple-negative breast cancer. (PMID: 32138762) Zheng S … Xie X (Journal of hematology & oncology 2020) 2 3
- LINC00857 expression predicts and mediates the response to platinum-based chemotherapy in muscle-invasive bladder cancer. (PMID: 29856124) Dudek AM … Verhaegh GW (Cancer medicine 2018) 2 3
- Non-coding RNA LINC00857 is predictive of poor patient survival and promotes tumor progression via cell cycle regulation in lung cancer. (PMID: 26862852) Wang L … Chen G (Oncotarget 2016) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC00857 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00857
- Origene Custom Protein Services for LINC00857
- Browse OriGene Inhibitory RNA Products For LINC00857
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00857
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00857
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00857
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00857
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00857
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00857
Sources for LINC00857 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB