Aliases for LINC00857 Gene

Subcategory (RNA class) for LINC00857 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC00857 Gene

  • Long Intergenic Non-Protein Coding RNA 857 2 3 5
  • LINC00857 2 5 165
  • LncRNA Highly Upregulated In Metastatic TNBC-Lymph Node 2 3
  • HUMT 2 3
  • NONHSAG006362.2 91
  • HSALNG0079188 164

External Ids for LINC00857 Gene

Previous GeneCards Identifiers for LINC00857 Gene

  • GC10P081968
  • GC10P080207
  • GC10P082160
  • GC10P083200

Summaries for LINC00857 Gene

GeneCards Summary for LINC00857 Gene

LINC00857 (Long Intergenic Non-Protein Coding RNA 857) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00857 include Lung Cancer and Large Cell Medulloblastoma.

Additional gene information for LINC00857 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00857 Gene

Genomics for LINC00857 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00857 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00857 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00857 Gene

Genomic Locations for LINC00857 Gene
chr10:80,206,672-80,229,592
(GRCh38/hg38)
Size:
22,921 bases
Orientation:
Plus strand
chr10:81,967,466-81,979,413
(GRCh37/hg19)
Size:
11,948 bases
Orientation:
Plus strand

Genomic View for LINC00857 Gene

Genes around LINC00857 on UCSC Golden Path with GeneCards custom track
LINC00857 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00857 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00857 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00857 Gene

Proteins for LINC00857 Gene

Post-translational modifications for LINC00857 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00857 Gene

Domains & Families for LINC00857 Gene

Gene Families for LINC00857 Gene

genes like me logo Genes that share domains with LINC00857: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00857 Gene

Function for LINC00857 Gene

Phenotypes From GWAS Catalog for LINC00857 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00857 Gene

Localization for LINC00857 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00857 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00857 Gene

Pathways & Interactions for LINC00857 Gene

PathCards logo

SuperPathways for LINC00857 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00857 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00857 Gene

Drugs & Compounds for LINC00857 Gene

No Compound Related Data Available

Transcripts for LINC00857 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00857 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024EAD0_9606 lncRNA 2161 3

Ensembl: ENST00000422847 (view in UCSC) ,

LNCipedia: LINC00857:1,

NONCODE: NONHSAT015237.2,

URS00003DD174_9606 lncRNA 629 3

Ensembl: ENST00000432308 (view in UCSC) ,

LNCipedia: LINC00857:2,

NONCODE: NONHSAT015238.2,

URS000075AEB1_9606 lncRNA 2161 2

HGNC: 45114,

RefSeq: NR_038464,

URS0000EF0A52_9606 lncRNA 2459 1

Ensembl: ENST00000660450 (view in UCSC) ,

URS0000EF2CCA_9606 lncRNA 2237 1

Ensembl: ENST00000671081 (view in UCSC) ,

LINC00857 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00857 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00857 Gene

No ASD Table

Relevant External Links for LINC00857 Gene

GeneLoc Exon Structure for
LINC00857

Expression for LINC00857 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00857 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00857

SOURCE GeneReport for Unigene cluster for LINC00857 Gene:

Hs.365566
genes like me logo Genes that share expression patterns with LINC00857: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00857 Gene

Orthologs for LINC00857 Gene

Evolution for LINC00857 Gene

ENSEMBL:
Gene Tree for LINC00857 (if available)
TreeFam:
Gene Tree for LINC00857 (if available)

No data available for Orthologs for LINC00857 Gene

Paralogs for LINC00857 Gene

No data available for Paralogs for LINC00857 Gene

Variants for LINC00857 Gene

Additional dbSNP identifiers (rs#s) for LINC00857 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00857 Gene

Variant ID Type Subtype PubMed ID
dgv15e203 CNV loss 21179565
esv3623948 CNV loss 21293372
esv3623949 CNV gain 21293372
nsv1141879 OTHER inversion 24896259
nsv551635 CNV loss 21841781
nsv948100 CNV duplication 23825009

Additional Variant Information for LINC00857 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00857

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00857 Gene

Disorders for LINC00857 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00857 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
large cell medulloblastoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC00857: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00857 Gene

Publications for LINC00857 Gene

  1. Long non-coding RNA HUMT hypomethylation promotes lymphangiogenesis and metastasis via activating FOXK1 transcription in triple-negative breast cancer. (PMID: 32138762) Zheng S … Xie X (Journal of hematology & oncology 2020) 2 3
  2. LINC00857 expression predicts and mediates the response to platinum-based chemotherapy in muscle-invasive bladder cancer. (PMID: 29856124) Dudek AM … Verhaegh GW (Cancer medicine 2018) 2 3
  3. Non-coding RNA LINC00857 is predictive of poor patient survival and promotes tumor progression via cell cycle regulation in lung cancer. (PMID: 26862852) Wang L … Chen G (Oncotarget 2016) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00857 Gene

Sources for LINC00857 Gene