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Aliases for LINC00856 Gene

Subcategory (RNA class) for LINC00856 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00856 Gene

  • Long Intergenic Non-Protein Coding RNA 856 2 3 5

External Ids for LINC00856 Gene

Previous GeneCards Identifiers for LINC00856 Gene

  • GC10P080470
  • GC10P080755
  • GC10P081183
  • GC10P078238
  • GC10P081946
  • GC10P078344
  • GC10P078584
  • GC10P078834
  • GC10P079084
  • GC10P079332
  • GC10P080321
  • GC10P081510
  • GC10P081841

Summaries for LINC00856 Gene

GeneCards Summary for LINC00856 Gene

LINC00856 (Long Intergenic Non-Protein Coding RNA 856) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00856 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00856 Gene

Genomics for LINC00856 Gene

GeneHancer (GH) Regulatory Elements for LINC00856 Gene

Promoters and enhancers for LINC00856 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J078656 Enhancer 0.9 Ensembl ENCODE 9.9 +478.6 478616 4.4 ELF3 CTCF RAD21 RFX1 POLR2A TRIM22 IRF2 SOX13 RFX3 EZH2 LINC00856 LOC105378379 ENSG00000282952 ENSG00000282863
GH10J078247 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 4.6 +69.7 69742 2.3 MAFK RFX1 ZIC2 POLR2A ZNF316 NFE2 FOS MAFG GLIS1 EMSY LINC00856 GC10P082816 LINC00595 ENSG00000282863
GH10J078451 Enhancer 0.7 Ensembl ENCODE 4.6 +272.1 272116 1.4 SP7 PRDM10 OSR2 ZBTB48 ZBTB17 POLR2A KLF17 GC10P082812 LINC00856 LOC105378378 LINC00595 ENSG00000282863
GH10J078171 Enhancer 1.2 VISTA Ensembl ENCODE 0.7 -3.5 -3484 9.4 ZIC2 SP1 USF1 ZKSCAN1 ZFHX2 WT1 HNF4A ETS1 KLF1 ZNF664 ENSG00000283096 RPS24 ENSG00000213514 LINC00856 LINC00595 LOC105378375 LOC105378374 ENSG00000282863 LOC105378373
GH10J078211 Enhancer 1.5 VISTA Ensembl ENCODE dbSUPER 0.3 +35.8 35816 7.6 CTCF RAD21 ZIC2 REST POLR2A JUND SMC3 NFIC NR2F2 RCOR1 LINC00595 LINC00856 ENSG00000282863 GC10P082816
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00856 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00856 Gene

Genomic Locations for LINC00856 Gene
chr10:78,179,185-78,551,355
(GRCh38/hg38)
Size:
372,171 bases
Orientation:
Plus strand
chr10:80,008,382-80,434,724
(GRCh37/hg19)
Size:
426,343 bases
Orientation:
Plus strand

Genomic View for LINC00856 Gene

Genes around LINC00856 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00856 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00856 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00856 Gene

Proteins for LINC00856 Gene

Post-translational modifications for LINC00856 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00856 Gene

Domains & Families for LINC00856 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00856 Gene

Function for LINC00856 Gene

Phenotypes From GWAS Catalog for LINC00856 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00856 Gene

Localization for LINC00856 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00856 Gene

Pathways & Interactions for LINC00856 Gene

PathCards logo

SuperPathways for LINC00856 Gene

No Data Available

Interacting Proteins for LINC00856 Gene

Gene Ontology (GO) - Biological Process for LINC00856 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00856 Gene

Drugs & Compounds for LINC00856 Gene

No Compound Related Data Available

Transcripts for LINC00856 Gene

mRNA/cDNA for LINC00856 Gene

(4) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00856 Gene

Long intergenic non-protein coding RNA 856:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00856 Gene

No ASD Table

Relevant External Links for LINC00856 Gene

GeneLoc Exon Structure for
LINC00856
ECgene alternative splicing isoforms for
LINC00856

Expression for LINC00856 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00856 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00856 Gene

This gene is overexpressed in Brain - Hypothalamus (x5.2), Brain - Anterior cingulate cortex (BA24) (x5.1), Brain - Frontal Cortex (BA9) (x5.0), and Brain - Cortex (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00856 Gene:

LINC00856

SOURCE GeneReport for Unigene cluster for LINC00856 Gene:

Hs.55047
genes like me logo Genes that share expression patterns with LINC00856: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00856 Gene

Orthologs for LINC00856 Gene

Evolution for LINC00856 Gene

ENSEMBL:
Gene Tree for LINC00856 (if available)
TreeFam:
Gene Tree for LINC00856 (if available)

No data available for Orthologs for LINC00856 Gene

Paralogs for LINC00856 Gene

No data available for Paralogs for LINC00856 Gene

Variants for LINC00856 Gene

Sequence variations from dbSNP and Humsavar for LINC00856 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000229075 -- 78,250,195(+) G/A intron_variant
rs1000239187 -- 78,249,851(+) C/T intron_variant
rs1000615882 -- 78,251,100(+) G/A non_coding_transcript_variant
rs1002234042 -- 78,252,693(+) C/T downstream_transcript_variant
rs1002286448 -- 78,252,403(+) C/G non_coding_transcript_variant

Additional Variant Information for LINC00856 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00856

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00856 Gene

Disorders for LINC00856 Gene

Additional Disease Information for LINC00856

No disorders were found for LINC00856 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00856 Gene

Publications for LINC00856 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LINC00856 Gene

Sources for LINC00856 Gene

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