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Aliases for LINC00854 Gene

Subcategory (RNA class) for LINC00854 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for LINC00854 Gene

  • Long Intergenic Non-Protein Coding RNA 854 2 3 5
  • TMEM106A Antisense RNA 1 (Non-Protein Coding) 2 3
  • TMEM106A Antisense RNA 1 (Tail To Tail) 2 3
  • TMEM106A Antisense RNA 1 2
  • TMEM106A-AS1 3

External Ids for LINC00854 Gene

Previous HGNC Symbols for LINC00854 Gene

  • TMEM106A-AS1

Previous GeneCards Identifiers for LINC00854 Gene

  • GC17M041370

Summaries for LINC00854 Gene

GeneCards Summary for LINC00854 Gene

LINC00854 (Long Intergenic Non-Protein Coding RNA 854) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LINC00854 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00854 Gene

Genomics for LINC00854 Gene

GeneHancer (GH) Regulatory Elements for LINC00854 Gene

Promoters and enhancers for LINC00854 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I043304 Enhancer 0.2 ENCODE 550.8 +0.8 760 0.9 GC17P043428 LINC00854
GH17I043168 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 +134.3 134331 5 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 NBR1 BRCA1 BRCA1P1 ENSG00000267002 ENSG00000267340 LOC101929767 PIR60622 NBR2 TMEM106A C17orf53
GH17I042386 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.7 +916.9 916949 4.3 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 STAT3 GC17M042386 ENSG00000267765 ENSG00000267002 ENSG00000259623 NBR1 CCR10 KAT2A CNTNAP1 KLHL10
GH17I042576 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 +727.2 727213 4.2 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 GC17P042577 GC17P042580 PSMC3IP DHX8 HMGN1P29 ENSG00000267758 TUBG2 NBR2 MLX STAT5A
GH17I043322 Enhancer 1.5 Ensembl ENCODE dbSUPER 12 -17.8 -17766 1.6 CLOCK MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF213 ZNF416 ZNF143 ENSG00000267340 UBTF ASB16-AS1 ENSG00000267002 DHX8 HMGN1P29 TMUB2 NBR2 LINC00910 PLEKHH3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00854 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00854 Gene

Genomic Locations for LINC00854 Gene
chr17:43,216,941-43,305,397
(GRCh38/hg38)
Size:
88,457 bases
Orientation:
Minus strand
chr17:41,368,960-41,383,338
(GRCh37/hg19)

Genomic View for LINC00854 Gene

Genes around LINC00854 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00854 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00854 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00854 Gene

Proteins for LINC00854 Gene

  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTD9
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GTD9

    Protein attributes for LINC00854 Gene

    Size:
    86 amino acids
    Molecular mass:
    9397 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GU98
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GU98

    Protein attributes for LINC00854 Gene

    Size:
    107 amino acids
    Molecular mass:
    11774 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVJ5
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GVJ5

    Protein attributes for LINC00854 Gene

    Size:
    87 amino acids
    Molecular mass:
    9468 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVQ3
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GVQ3

    Protein attributes for LINC00854 Gene

    Size:
    168 amino acids
    Molecular mass:
    19413 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVX4
    Recommended name:
    HCG2045121
    Protein Accession:
    A0A1B0GVX4

    Protein attributes for LINC00854 Gene

    Size:
    137 amino acids
    Molecular mass:
    15597 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVZ7
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GVZ7

    Protein attributes for LINC00854 Gene

    Size:
    87 amino acids
    Molecular mass:
    10188 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00854 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GW31
    Recommended name:
    Long intergenic non-protein coding RNA 854
    Protein Accession:
    A0A1B0GW31

    Protein attributes for LINC00854 Gene

    Size:
    39 amino acids
    Molecular mass:
    4245 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00854 Gene

Post-translational modifications for LINC00854 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00854 Gene

Domains & Families for LINC00854 Gene

Gene Families for LINC00854 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for LINC00854 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00854: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00854 Gene

Function for LINC00854 Gene

Phenotypes From GWAS Catalog for LINC00854 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00854 Gene

Localization for LINC00854 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00854 Gene

Pathways & Interactions for LINC00854 Gene

SuperPathways for LINC00854 Gene

No Data Available

Interacting Proteins for LINC00854 Gene

Gene Ontology (GO) - Biological Process for LINC00854 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00854 Gene

Drugs & Compounds for LINC00854 Gene

No Compound Related Data Available

Transcripts for LINC00854 Gene

mRNA/cDNA for LINC00854 Gene

(2) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00854 Gene

Long intergenic non-protein coding RNA 854:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00854 Gene

No ASD Table

Relevant External Links for LINC00854 Gene

GeneLoc Exon Structure for
LINC00854
ECgene alternative splicing isoforms for
LINC00854

Expression for LINC00854 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00854 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00854 Gene

This gene is overexpressed in Testis (x21.7).

NURSA nuclear receptor signaling pathways regulating expression of LINC00854 Gene:

LINC00854

SOURCE GeneReport for Unigene cluster for LINC00854 Gene:

Hs.546898
genes like me logo Genes that share expression patterns with LINC00854: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00854 Gene

Orthologs for LINC00854 Gene

Evolution for LINC00854 Gene

ENSEMBL:
Gene Tree for LINC00854 (if available)
TreeFam:
Gene Tree for LINC00854 (if available)

No data available for Orthologs for LINC00854 Gene

Paralogs for LINC00854 Gene

No data available for Paralogs for LINC00854 Gene

Variants for LINC00854 Gene

Sequence variations from dbSNP and Humsavar for LINC00854 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000376047 -- 43,223,441(-) A/T intron_variant
rs1000406989 -- 43,226,186(-) A/G intron_variant
rs1001284195 -- 43,221,497(-) C/G non_coding_transcript_variant
rs1001345434 -- 43,222,246(-) ACCTCCACCTCCA/ACCTCCACCTCCACCTCCA intron_variant
rs1001952185 -- 43,224,405(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00854 Gene

Variant ID Type Subtype PubMed ID
nsv962328 CNV duplication 23825009
nsv510712 CNV deletion 20534489
nsv1160487 CNV duplication 26073780
nsv1146669 OTHER inversion 26484159
nsv1079031 OTHER inversion 25765185
esv6011 OTHER inversion 19470904
esv33998 OTHER inversion 15654335
esv2672913 CNV deletion 23128226
dgv1466n106 OTHER inversion 24896259

Additional Variant Information for LINC00854 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00854

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00854 Gene

Disorders for LINC00854 Gene

Additional Disease Information for LINC00854

No disorders were found for LINC00854 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00854 Gene

Publications for LINC00854 Gene

  1. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. (PMID: 22196729) Ulitsky I … Bartel DP (Cell 2011) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for LINC00854 Gene

Sources for LINC00854 Gene

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