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Aliases for LINC00844 Gene

Subcategory (RNA class) for LINC00844 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00844 Gene

  • Long Intergenic Non-Protein Coding RNA 844 2 3 5

External Ids for LINC00844 Gene

Previous GeneCards Identifiers for LINC00844 Gene

  • GC10P060761

Summaries for LINC00844 Gene

GeneCards Summary for LINC00844 Gene

LINC00844 (Long Intergenic Non-Protein Coding RNA 844) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00844 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00844 Gene

Genomics for LINC00844 Gene

GeneHancer (GH) Regulatory Elements for LINC00844 Gene

Promoters and enhancers for LINC00844 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J058998 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 600.7 +0.3 320 1.7 SP1 PPARG RXRA RXRB JUND YY1 RAD21 HNF4A MAX REST LINC00844 PHYHIPL LOC102724768
GH10J058999 Enhancer 0.2 dbSUPER 600.7 -1.2 -1166 0.8 LINC00844 GC10M058913
GH10J059000 Enhancer 0.2 dbSUPER 600.7 -1.9 -1926 0.1 LINC00844 GC10M058913
GH10J059006 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.6 7568 1.8 ELF3 CEBPG RERE ZNF687 MAFK TFE3 SP1 HNF1A PPARG SP5 LINC00844 LOC102724768
GH10J058992 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -5.0 -5021 3.4 CEBPG RERE ZNF687 ZNF24 SP1 PPARG HNF1A CREM MLLT1 ZNF644 LINC00844 GC10M058913
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00844 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00844 Gene

Genomic Locations for LINC00844 Gene
chr10:58,999,518-59,001,617
(GRCh38/hg38)
Size:
2,100 bases
Orientation:
Plus strand
chr10:60,759,385-60,761,303
(GRCh37/hg19)
Size:
1,919 bases
Orientation:
Plus strand

Genomic View for LINC00844 Gene

Genes around LINC00844 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00844 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00844 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00844 Gene

Proteins for LINC00844 Gene

Post-translational modifications for LINC00844 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00844 Gene

Domains & Families for LINC00844 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00844 Gene

Function for LINC00844 Gene

Phenotypes From GWAS Catalog for LINC00844 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00844 Gene

Localization for LINC00844 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00844 Gene

Pathways & Interactions for LINC00844 Gene

PathCards logo

SuperPathways for LINC00844 Gene

No Data Available

Interacting Proteins for LINC00844 Gene

Gene Ontology (GO) - Biological Process for LINC00844 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00844 Gene

Drugs & Compounds for LINC00844 Gene

No Compound Related Data Available

Transcripts for LINC00844 Gene

mRNA/cDNA for LINC00844 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LINC00844 Gene

Long intergenic non-protein coding RNA 844:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00844 Gene

No ASD Table

Relevant External Links for LINC00844 Gene

GeneLoc Exon Structure for
LINC00844
ECgene alternative splicing isoforms for
LINC00844

Expression for LINC00844 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00844 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00844 Gene

This gene is overexpressed in Brain - Substantia nigra (x6.1), Brain - Spinal cord (cervical c-1) (x5.6), Brain - Hippocampus (x5.6), Brain - Amygdala (x4.7), Brain - Putamen (basal ganglia) (x4.6), and Brain - Hypothalamus (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of LINC00844 Gene:

LINC00844

SOURCE GeneReport for Unigene cluster for LINC00844 Gene:

Hs.170953
genes like me logo Genes that share expression patterns with LINC00844: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00844 Gene

Orthologs for LINC00844 Gene

Evolution for LINC00844 Gene

ENSEMBL:
Gene Tree for LINC00844 (if available)
TreeFam:
Gene Tree for LINC00844 (if available)

No data available for Orthologs for LINC00844 Gene

Paralogs for LINC00844 Gene

No data available for Paralogs for LINC00844 Gene

Variants for LINC00844 Gene

Sequence variations from dbSNP and Humsavar for LINC00844 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000204157 -- 58,998,965(+) T/A/C upstream_transcript_variant
rs1000277324 -- 59,001,031(+) A/T intron_variant
rs1000793914 -- 59,001,302(+) T/C non_coding_transcript_variant
rs1001399644 -- 58,999,503(+) G/A upstream_transcript_variant
rs1001792195 -- 59,001,934(+) G/A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00844 Gene

Variant ID Type Subtype PubMed ID
esv2759761 CNV gain 17122850
nsv831887 CNV gain 17160897

Additional Variant Information for LINC00844 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00844

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00844 Gene

Disorders for LINC00844 Gene

Additional Disease Information for LINC00844

No disorders were found for LINC00844 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00844 Gene

Publications for LINC00844 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58

Products for LINC00844 Gene

Sources for LINC00844 Gene

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