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Aliases for LINC00843 Gene

Subcategory (RNA class) for LINC00843 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00843 Gene

  • Long Intergenic Non-Protein Coding RNA 843 2 3 5

External Ids for LINC00843 Gene

Previous GeneCards Identifiers for LINC00843 Gene

  • GC10P051732
  • GC10P049972

Summaries for LINC00843 Gene

GeneCards Summary for LINC00843 Gene

LINC00843 (Long Intergenic Non-Protein Coding RNA 843) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00843 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00843 Gene

Genomics for LINC00843 Gene

GeneHancer (GH) Regulatory Elements for LINC00843 Gene

Promoters and enhancers for LINC00843 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J049940 Promoter 0.5 Ensembl 600.7 -0.1 -55 4 LINC00843 TIMM23B PIR55648 PARG
GH10J050067 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 55.5 +125.8 125845 2.6 SP1 MNT CBFA2T2 NKRF ZNF121 POLR2A ZNF687 ZSCAN21 NFRKB FOS WASHC2A FAM21EP LINC00843 ERCC6 AGAP6 PARG RNA5SP317 SGMS1-AS1 SGMS1 BEND3P1
GH10J050618 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 40.7 +680.3 680330 8.4 SP1 CC2D1A ZFX ELF3 MNT CBFA2T2 ZNF148 NKRF POLR2A MLLT1 SGMS1 GC10P050623 GC10P050620 AGAP6 LINC00843 BEND3P1 WASHC2A PARG RNA5SP317 SGMS1-AS1
GH10J049296 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.5 -643.1 -643128 6.3 ZFX CC2D1A ZKSCAN8 CBFA2T2 MLLT1 GTF2F1 CDC5L TRIM24 ZNF639 EGR1 C10orf71 C10orf71-AS1 LINC00843 AGAP6 WASHC2A RNA5SP317 DRGX ERCC6
GH10J049183 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 17.6 -754.8 -754774 8.3 CC2D1A CBFA2T2 MLLT1 POLR2A GTF2F1 CSDE1 ZNF687 BACH1 TRIM24 ZNF639 TMEM273 VSTM4 LINC00843 AGAP6 ERCC6 WASHC2A RNA5SP317 FAM170B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00843 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00843 Gene

Genomic Locations for LINC00843 Gene
chr10:49,942,056-50,011,654
(GRCh38/hg38)
Size:
69,599 bases
Orientation:
Plus strand
chr10:51,732,523-51,741,813
(GRCh37/hg19)
Size:
9,291 bases
Orientation:
Plus strand

Genomic View for LINC00843 Gene

Genes around LINC00843 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00843 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00843 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC00843 Gene

Proteins for LINC00843 Gene

Post-translational modifications for LINC00843 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00843 Gene

Domains & Families for LINC00843 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00843 Gene

Function for LINC00843 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00843 Gene

Localization for LINC00843 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00843 Gene

Pathways & Interactions for LINC00843 Gene

PathCards logo

SuperPathways for LINC00843 Gene

No Data Available

Interacting Proteins for LINC00843 Gene

Gene Ontology (GO) - Biological Process for LINC00843 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00843 Gene

Drugs & Compounds for LINC00843 Gene

No Compound Related Data Available

Transcripts for LINC00843 Gene

mRNA/cDNA for LINC00843 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00843 Gene

No ASD Table

Relevant External Links for LINC00843 Gene

GeneLoc Exon Structure for
LINC00843
ECgene alternative splicing isoforms for
LINC00843

Expression for LINC00843 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00843 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00843 Gene:

LINC00843
genes like me logo Genes that share expression patterns with LINC00843: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00843 Gene

Orthologs for LINC00843 Gene

Evolution for LINC00843 Gene

ENSEMBL:
Gene Tree for LINC00843 (if available)
TreeFam:
Gene Tree for LINC00843 (if available)

No data available for Orthologs for LINC00843 Gene

Paralogs for LINC00843 Gene

No data available for Paralogs for LINC00843 Gene

Variants for LINC00843 Gene

Additional Variant Information for LINC00843 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00843

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00843 Gene

Disorders for LINC00843 Gene

No disorders were found for LINC00843 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC00843 Gene

Publications for LINC00843 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00843 Gene

Sources for LINC00843 Gene

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