Aliases for LINC00841 Gene

Data sources for LINC00841 Gene:

Subcategory (RNA class) for LINC00841 Gene

lncRNA

Aliases for LINC00841 Gene

External Ids for LINC00841 Gene

Previous GeneCards Identifiers for LINC00841 Gene

  • GC10P044405

Summaries for LINC00841 Gene

GeneCards Summary for LINC00841 Gene

LINC00841 (Long Intergenic Non-Protein Coding RNA 841) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00841 include Encephalopathy, Ethylmalonic.

Additional gene information for LINC00841 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00841 Gene

Genomics for LINC00841 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00841 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043898 Enhancer 0.5 Ensembl 250.7 -1.9 -1863 2.2 NFE2 RAD51 RCOR1 GATA2 NFIB ZNF687 LINC00841 CXCL12 LINC02659 HSALNG0077594 LOC107984189 LINC00619 LINC00840
GH10J043904 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.7 +4.1 4140 3 BHLHE40 CTCF RCOR1 GATA2 MAFK ZBTB33 CHD2 CXCL12 LINC02659 LINC00841 ENSG00000227029 LOC107984189
GH10J043891 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -8.8 -8802 1.7 ZIC2 ZNF341 REST CEBPB LINC00841 HSALNG0077594 LOC107984189 LINC00619 LINC00840 CXCL12
GH10J043909 Enhancer 0.7 Ensembl ENCODE 0.4 +9.3 9307 2.1 RXRA NFE2 MAFG RAD21 SP1 NR2F2 EMSY PRDM1 LINC02659 ENSG00000227029 CXCL12 LINC00841 lnc-ZNF32-8 LOC107984189
GH10J043878 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 0.3 -22.1 -22064 2.6 ZIC2 ZNF341 ZBTB40 EGR2 EP300 ZFHX2 HSALNG0077594 LINC02659 LINC00841 LOC107984189 LINC00619 LINC00840 CXCL12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00841 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00841 Gene

Latest Assembly
chr10:43,901,364-43,984,619
(GRCh38/hg38)
Size:
83,256 bases
Orientation:
Plus strand

Previous Assembly
chr10:44,404,744-44,476,713
(GRCh37/hg19 by Entrez Gene)
Size:
71,970 bases
Orientation:
Plus strand

chr10:44,434,451-44,439,914
(GRCh37/hg19 by Ensembl)
Size:
5,464 bases
Orientation:
Plus strand

Genomic View for LINC00841 Gene

Genes around LINC00841 on UCSC Golden Path with GeneCards custom track
LINC00841 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00841 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00841 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00841 Gene

Proteins for LINC00841 Gene

Post-translational modifications for LINC00841 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00841 Gene

Domains & Families for LINC00841 Gene

Gene Families for LINC00841 Gene

genes like me logo Genes that share domains with LINC00841: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00841 Gene

Function for LINC00841 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00841 Gene

Localization for LINC00841 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00841 Gene

Pathways & Interactions for LINC00841 Gene

PathCards logo

SuperPathways for LINC00841 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00841 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00841 Gene

Drugs & Compounds for LINC00841 Gene

No Compound Related Data Available

Transcripts for LINC00841 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00841 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000008A311_9606 lncRNA 2131 4

Ensembl: ENST00000451929 (view in UCSC) ,

LncBook: HSALNT0161989,

LNCipedia: lnc-ZNF485-68:25,

NONCODE: NONHSAT013016.2,

URS0000A76636_9606 lncRNA 1209 2

RefSeq: NR_136147,

LNCipedia: lnc-ZNF485-68:16,

URS0000A766AF_9606 lncRNA 997 2

RefSeq: NR_033846,

LNCipedia: lnc-ZNF485-68:17,

URS0000A7695A_9606 lncRNA 827 2

RefSeq: NR_136148,

LNCipedia: lnc-ZNF485-68:22,

URS0000EEE124_9606 lncRNA 1235 1

Ensembl: ENST00000660538 (view in UCSC) ,

LINC00841 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00841 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00841 Gene

No ASD Table

Relevant External Links for LINC00841 Gene

GeneLoc Exon Structure for
LINC00841

Expression for LINC00841 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00841 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00841 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x27.3) and Testis (x21.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00841

SOURCE GeneReport for Unigene cluster for LINC00841 Gene:

Hs.730228
genes like me logo Genes that share expression patterns with LINC00841: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00841 Gene

Orthologs for LINC00841 Gene

Evolution for LINC00841 Gene

ENSEMBL:
Gene Tree for LINC00841 (if available)
TreeFam:
Gene Tree for LINC00841 (if available)

No data available for Orthologs for LINC00841 Gene

Paralogs for LINC00841 Gene

No data available for Paralogs for LINC00841 Gene

Variants for LINC00841 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00841 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00841 Gene

Variant ID Type Subtype PubMed ID
esv3623052 CNV gain 21293372
esv3891796 CNV loss 25118596

Additional Variant Information for LINC00841 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00841

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00841 Gene

Disorders for LINC00841 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00841 Gene - From: COP

Disorder Aliases PubMed IDs
encephalopathy, ethylmalonic
  • ee
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00841

genes like me logo Genes that share disorders with LINC00841: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00841 Gene

Publications for LINC00841 Gene

  1. Association of the rs1870634 Variant in Long Intergenic Non-protein Coding RNA 841 with Coronary Artery Disease: A GWAS-Replication Study in an Iranian Population. (PMID: 29654577) Tarighi S … Shanaki M (Biochemical genetics 2018) 3
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00841 Gene

Sources for LINC00841 Gene