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Aliases for LINC00841 Gene

Subcategory (RNA class) for LINC00841 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00841 Gene

  • Long Intergenic Non-Protein Coding RNA 841 2 3 5

External Ids for LINC00841 Gene

Previous GeneCards Identifiers for LINC00841 Gene

  • GC10P044405

Summaries for LINC00841 Gene

GeneCards Summary for LINC00841 Gene

LINC00841 (Long Intergenic Non-Protein Coding RNA 841) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00841 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00841 Gene

Genomics for LINC00841 Gene

GeneHancer (GH) Regulatory Elements for LINC00841 Gene

Promoters and enhancers for LINC00841 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043909 Enhancer 0.8 Ensembl ENCODE 600.7 +1.2 1197 2.6 SP1 PRDM1 RXRA NFE2 MAFG NR2F2 RAD21 EMSY LINC02659 LINC00841 ENSG00000227029 CXCL12
GH10J043861 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.3 -45.9 -45883 3 ELF3 CEBPG MAFK TFE3 SP1 HNF1A PPARG SP5 ZNF384 ZNF644 LINC02659 LINC00619 LINC00840 LINC00841
GH10J043891 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -16.9 -16898 2 ZIC2 ZNF341 REST LINC00841 LINC00619 LINC00840
GH10J043867 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 -41.2 -41159 1.8 ELF3 TFE3 SP7 ZNF644 ZNF600 ZNF692 ZNF561 SOX13 MYNN FOS LINC02659 LINC00619 LINC00840 LINC00841
GH10J043888 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 -20.4 -20364 0.9 CEBPB FOS EP300 JUND LINC02659 CXCL12 LINC00841 LINC00619 LINC00840
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00841 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00841 Gene

Genomic Locations for LINC00841 Gene
chr10:43,909,304-43,969,907
(GRCh38/hg38)
Size:
60,604 bases
Orientation:
Plus strand
chr10:44,404,752-44,465,355
(GRCh37/hg19)
Size:
60,604 bases
Orientation:
Plus strand

Genomic View for LINC00841 Gene

Genes around LINC00841 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00841 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00841 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00841 Gene

Proteins for LINC00841 Gene

Post-translational modifications for LINC00841 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00841 Gene

Domains & Families for LINC00841 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00841 Gene

Function for LINC00841 Gene

Phenotypes From GWAS Catalog for LINC00841 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00841 Gene

Localization for LINC00841 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00841 Gene

Pathways & Interactions for LINC00841 Gene

PathCards logo

SuperPathways for LINC00841 Gene

No Data Available

Interacting Proteins for LINC00841 Gene

Gene Ontology (GO) - Biological Process for LINC00841 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00841 Gene

Drugs & Compounds for LINC00841 Gene

No Compound Related Data Available

Transcripts for LINC00841 Gene

mRNA/cDNA for LINC00841 Gene

(7) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Unigene Clusters for LINC00841 Gene

Long intergenic non-protein coding RNA 841:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00841 Gene

No ASD Table

Relevant External Links for LINC00841 Gene

GeneLoc Exon Structure for
LINC00841
ECgene alternative splicing isoforms for
LINC00841

Expression for LINC00841 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00841 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00841 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x27.3) and Testis (x21.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00841 Gene:

LINC00841

SOURCE GeneReport for Unigene cluster for LINC00841 Gene:

Hs.730228
genes like me logo Genes that share expression patterns with LINC00841: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00841 Gene

Orthologs for LINC00841 Gene

Evolution for LINC00841 Gene

ENSEMBL:
Gene Tree for LINC00841 (if available)
TreeFam:
Gene Tree for LINC00841 (if available)

No data available for Orthologs for LINC00841 Gene

Paralogs for LINC00841 Gene

No data available for Paralogs for LINC00841 Gene

Variants for LINC00841 Gene

Sequence variations from dbSNP and Humsavar for LINC00841 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000113777 -- 43,958,336(+) G/C genic_downstream_transcript_variant, intron_variant
rs1000118849 -- 43,920,325(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000128907 -- 43,928,447(+) C/G genic_downstream_transcript_variant, intron_variant
rs1000176823 -- 43,908,307(+) T/C upstream_transcript_variant
rs1000187613 -- 43,945,918(+) T/C genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00841 Gene

Variant ID Type Subtype PubMed ID
esv3623052 CNV gain 21293372
esv3891796 CNV loss 25118596

Additional Variant Information for LINC00841 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00841

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00841 Gene

Disorders for LINC00841 Gene

Additional Disease Information for LINC00841

No disorders were found for LINC00841 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00841 Gene

Publications for LINC00841 Gene

  1. Association of the rs1870634 Variant in Long Intergenic Non-protein Coding RNA 841 with Coronary Artery Disease: A GWAS-Replication Study in an Iranian Population. (PMID: 29654577) Tarighi S … Shanaki M (Biochemical genetics 2018) 3 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00841 Gene

Sources for LINC00841 Gene

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