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Aliases for LINC00840 Gene

Subcategory (RNA class) for LINC00840 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00840 Gene

  • Long Intergenic Non-Protein Coding RNA 840 2 3 5

External Ids for LINC00840 Gene

Previous GeneCards Identifiers for LINC00840 Gene

  • GC10P044356

Summaries for LINC00840 Gene

GeneCards Summary for LINC00840 Gene

LINC00840 (Long Intergenic Non-Protein Coding RNA 840) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00840 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00840 Gene

Genomics for LINC00840 Gene

GeneHancer (GH) Regulatory Elements for LINC00840 Gene

Promoters and enhancers for LINC00840 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043857 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -1.9 -1871 0.7 JUND POLR2A JUN ZNF341 RCOR1 FOS ZIC2 CHD2 LINC00840 LINC00619
GH10J043824 Enhancer 0.6 Ensembl ENCODE 5.2 -34.2 -34230 1.1 HLF NR2F2 CXCL12 LINC00840 LINC00619 HNRNPA3P1
GH10J043939 Enhancer 0.5 ENCODE 5.4 +81.0 80990 1 POLR2A GLIS1 EED IKZF1 RCOR1 MNT RUNX3 LINC00840 PIR37397 LINC00841 ENSG00000237590
GH10J043861 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.0 4010 3 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 FOS LOC105378277 LINC00840 LINC00841
GH10J043867 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.7 8734 1.8 ELF3 SOX13 SAP130 JUN RARA TEAD3 FOSL2 FOS ZNF600 SOX5 LINC00619 LOC105378277 LINC00840 LINC00841
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00840 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00840 Gene

Genomic Locations for LINC00840 Gene
chr10:43,859,411-43,895,433
(GRCh38/hg38)
Size:
36,023 bases
Orientation:
Plus strand
chr10:44,354,859-44,390,881
(GRCh37/hg19)

Genomic View for LINC00840 Gene

Genes around LINC00840 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00840 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00840 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00840 Gene

Proteins for LINC00840 Gene

Post-translational modifications for LINC00840 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00840 Gene

Domains & Families for LINC00840 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00840 Gene

Function for LINC00840 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00840 Gene

Localization for LINC00840 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00840 Gene

Pathways & Interactions for LINC00840 Gene

SuperPathways for LINC00840 Gene

No Data Available

Interacting Proteins for LINC00840 Gene

Gene Ontology (GO) - Biological Process for LINC00840 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00840 Gene

Drugs & Compounds for LINC00840 Gene

No Compound Related Data Available

Transcripts for LINC00840 Gene

mRNA/cDNA for LINC00840 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00840 Gene

Long intergenic non-protein coding RNA 840:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00840 Gene

No ASD Table

Relevant External Links for LINC00840 Gene

GeneLoc Exon Structure for
LINC00840
ECgene alternative splicing isoforms for
LINC00840

Expression for LINC00840 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00840 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00840 Gene:

LINC00840

SOURCE GeneReport for Unigene cluster for LINC00840 Gene:

Hs.462615
genes like me logo Genes that share expression patterns with LINC00840: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00840 Gene

Orthologs for LINC00840 Gene

Evolution for LINC00840 Gene

ENSEMBL:
Gene Tree for LINC00840 (if available)
TreeFam:
Gene Tree for LINC00840 (if available)

No data available for Orthologs for LINC00840 Gene

Paralogs for LINC00840 Gene

No data available for Paralogs for LINC00840 Gene

Variants for LINC00840 Gene

Sequence variations from dbSNP and Humsavar for LINC00840 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000040859 -- 43,875,298(+) G/A intron_variant
rs1000114158 -- 43,867,799(+) G/A intron_variant
rs1000214343 -- 43,870,385(+) A/C intron_variant
rs1000393393 -- 43,865,360(+) C/T intron_variant
rs1000422788 -- 43,869,871(+) GTGTGTGTG/GTGTGTG intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00840 Gene

Variant ID Type Subtype PubMed ID
esv2667357 CNV deletion 23128226
esv3623051 CNV loss 21293372
esv3891796 CNV loss 25118596

Additional Variant Information for LINC00840 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00840

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00840 Gene

Disorders for LINC00840 Gene

Additional Disease Information for LINC00840

No disorders were found for LINC00840 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00840 Gene

Publications for LINC00840 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00840 Gene

Sources for LINC00840 Gene

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