Aliases for LINC00840 Gene

Subcategory (RNA class) for LINC00840 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00840 Gene

  • Long Intergenic Non-Protein Coding RNA 840 2 3 5
  • HSALNG0077592 167
  • Lnc-ZNF485-68 168
  • NONHSAG005734 92
  • HSALNG0077590 167
  • NONHSAG005733 92
  • LINC00840 2

External Ids for LINC00840 Gene

Previous GeneCards Identifiers for LINC00840 Gene

  • GC10P044356
  • GC10P043859
  • GC10P043780

Summaries for LINC00840 Gene

GeneCards Summary for LINC00840 Gene

LINC00840 (Long Intergenic Non-Protein Coding RNA 840) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00840 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00840 Gene

Genomics for LINC00840 Gene

GeneHancer (GH) Regulatory Elements for LINC00840 Gene

Promoters and enhancers for LINC00840 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043778 Enhancer 0.4 Ensembl 500.7 +0.2 154 1 ESR1 GATA3 FOXA1 LINC02658 LINC00619 LINC00840 LOC105378275 LINC02659 HNRNPA3P1
GH10J043780 Enhancer 0.2 Ensembl 500.7 +2.0 1955 0.6 LINC02658 LINC00619 LINC00840 LOC105378275 LINC02659 HNRNPA3P1
GH10J043939 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 5.3 +163.0 162955 4.6 ZNF316 POLR2A USF1 ZFHX2 IKZF1 RCOR1 GLIS1 SMARCA4 BHLHE40 ZNF133 LINC02659 LINC00840 lnc-ZNF32-8 lnc-ZNF32-9 LINC00841
GH10J043824 Enhancer 0.5 Ensembl ENCODE 5.2 +46.3 46255 1.6 NR2F2 HLF CXCL12 LINC02659 LINC00840 HSALNG0077588 piR-33056-002 LINC00619
GH10J043781 Enhancer 0.7 Ensembl ENCODE 0.7 +3.1 3055 1.2 ZIC2 ZFHX2 RCOR1 FEZF1 GLIS1 MYC MAX EGR2 DPF2 LINC00619 LINC00840 LOC105378275 HNRNPA3P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00840 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00840 Gene

Genomic Locations for LINC00840 Gene
chr10:43,778,946-43,901,004
(GRCh38/hg38)
Size:
122,059 bases
Orientation:
Plus strand
chr10:44,354,859-44,390,881
(GRCh37/hg19)
Size:
36,023 bases
Orientation:
Plus strand

Genomic View for LINC00840 Gene

Genes around LINC00840 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00840 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00840 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00840 Gene

Proteins for LINC00840 Gene

Post-translational modifications for LINC00840 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00840 Gene

Domains & Families for LINC00840 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00840 Gene

Function for LINC00840 Gene

Phenotypes From GWAS Catalog for LINC00840 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00840 Gene

Localization for LINC00840 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00840 gene
Compartment Confidence
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00840 Gene

Pathways & Interactions for LINC00840 Gene

PathCards logo

SuperPathways for LINC00840 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00840 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00840 Gene

Drugs & Compounds for LINC00840 Gene

No Compound Related Data Available

Transcripts for LINC00840 Gene

mRNA/cDNA for LINC00840 Gene

35 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
20 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
14 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00840 Gene

No ASD Table

Relevant External Links for LINC00840 Gene

GeneLoc Exon Structure for
LINC00840

Expression for LINC00840 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00840 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00840

SOURCE GeneReport for Unigene cluster for LINC00840 Gene:

Hs.462615
genes like me logo Genes that share expression patterns with LINC00840: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00840 Gene

Orthologs for LINC00840 Gene

Evolution for LINC00840 Gene

ENSEMBL:
Gene Tree for LINC00840 (if available)
TreeFam:
Gene Tree for LINC00840 (if available)

No data available for Orthologs for LINC00840 Gene

Paralogs for LINC00840 Gene

No data available for Paralogs for LINC00840 Gene

Variants for LINC00840 Gene

Additional dbSNP identifiers (rs#s) for LINC00840 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00840 Gene

Variant ID Type Subtype PubMed ID
esv2667357 CNV deletion 23128226
esv3623051 CNV loss 21293372
esv3891796 CNV loss 25118596

Additional Variant Information for LINC00840 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00840

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00840 Gene

Disorders for LINC00840 Gene

Additional Disease Information for LINC00840

No disorders were found for LINC00840 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00840 Gene

Publications for LINC00840 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC00840 Gene

Sources for LINC00840 Gene