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Aliases for LINC00839 Gene
Subcategory (RNA class) for LINC00839 Gene
lncRNA
Aliases for LINC00839 Gene
External Ids for LINC00839 Gene
- HGNC: 28269
- NCBI Entrez Gene: 84856
- Ensembl: ENSG00000185904
Previous GeneCards Identifiers for LINC00839 Gene
- GC10P042972
Summaries for LINC00839 Gene
GeneCards Summary for LINC00839 Gene
LINC00839 (Long Intergenic Non-Protein Coding RNA 839) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00839 Gene
- HGNC (28269)
- NCBI Entrez Gene (84856)
- Ensembl (ENSG00000185904)
- Open Targets Platform(ENSG00000185904)
- Search for LINC00839 at DataMed
- Search for LINC00839 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00839 Gene
Genomics for LINC00839 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00839 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00839 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00839 Gene
Latest Assembly
- chr10:42,475,480-42,496,726
- (GRCh38/hg38)
- Size:
- 21,247 bases
- Orientation:
- Plus strand
Previous Assembly
- chr10:42,970,939-42,990,785
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 19,847 bases
- Orientation:
- Plus strand
- chr10:42,970,991-42,990,784
- (GRCh37/hg19 by Ensembl)
- Size:
- 19,794 bases
- Orientation:
- Plus strand
Genomic View for LINC00839 Gene
Genes around LINC00839 on UCSC Golden Path with GeneCards custom track
LINC00839 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 10q11.21 by HGNC
- 10q11.21 by Entrez Gene
- 10q11.21 by Ensembl
LINC00839 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00839 Gene
Proteins for LINC00839 Gene
Post-translational modifications for LINC00839 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00839 Gene
Domains & Families for LINC00839 Gene
Gene Families for LINC00839 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00839 Gene
Function for LINC00839 Gene
Phenotypes From GWAS Catalog for LINC00839 Gene
Phenotypes for LINC00839 Gene
- GenomeRNAi human phenotypes for LINC00839:
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00839 - Starting at $85 >
- * LINC00839 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00839
- Browse OriGene Inhibitory RNA Products For LINC00839
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00839 - Starting at $45 >
- * LINC00839 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00839 Gene
Localization for LINC00839 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00839 Gene
Transcripts for LINC00839 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00839 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000EF003C_9606 | lncRNA | 3982 | 1 |
Ensembl: ENST00000659650 (view in UCSC) , |
| URS0000EF6412_9606 | lncRNA | 3749 | 1 |
Ensembl: ENST00000670679 (view in UCSC) , |
| URS000075BFEF_9606 | lncRNA | 2306 | 1 |
RefSeq: NR_026827, |
| URS0000EF61F5_9606 | lncRNA | 2304 | 1 |
Ensembl: ENST00000670637 (view in UCSC) , |
| URS0000EEB314_9606 | lncRNA | 2254 | 1 |
Ensembl: ENST00000429940 (view in UCSC) , |
LINC00839 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00839 Gene
- 1 REFSEQ mRNAs :
- 8 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for LINC00839 - Starting at $85 >
- * LINC00839 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for LINC00839
- Browse OriGene Inhibitory RNA Products For LINC00839
Clone products for research
- Applied Biological Materials (abm): Clones for LINC00839 - Starting at $45 >
- * LINC00839 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b | · | 4c | ^ | 5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||
| SP2: | - | ||||||||||||||||||
| SP3: | |||||||||||||||||||
| SP4: |
Relevant External Links for LINC00839 Gene
- GeneLoc Exon Structure for
- LINC00839
Expression for LINC00839 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00839 Gene
This gene is overexpressed in Kidney - Cortex (x5.8) and Brain - Caudate (basal ganglia) (x4.0).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00839
SOURCE GeneReport for Unigene cluster for LINC00839 Gene:
Hs.55977Primer products for research
-
OriGene qPCR primer pairs for LINC00839
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00839 Gene
Orthologs for LINC00839 Gene
No data available for Orthologs for LINC00839 Gene
Paralogs for LINC00839 Gene
No data available for Paralogs for LINC00839 Gene
Variants for LINC00839 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1097n54 | CNV | gain | 21841781 |
| dgv1098n54 | CNV | gain | 21841781 |
| esv2759746 | CNV | loss | 17122850 |
| esv3576449 | CNV | gain | 25503493 |
| esv3623008 | CNV | gain | 21293372 |
| esv3623011 | CNV | loss | 21293372 |
| esv3891789 | CNV | gain | 25118596 |
| esv3891795 | CNV | gain | 25118596 |
| nsv1042764 | CNV | gain | 25217958 |
| nsv1051346 | CNV | gain | 25217958 |
| nsv466877 | CNV | gain | 19166990 |
| nsv469725 | CNV | gain | 16826518 |
| nsv471665 | CNV | gain | 15918152 |
| nsv550672 | CNV | gain | 21841781 |
| nsv6498 | CNV | insertion | 18451855 |
Additional Variant Information for LINC00839 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00839
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00839 Gene
Disorders for LINC00839 Gene
Additional Disease Information for LINC00839
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC00839 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00839 Gene
Publications for LINC00839 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
- LncRNAs-directed PTEN enzymatic switch governs epithelial-mesenchymal transition. (PMID: 30631154) Hu Q … Yang L (Cell research 2019) 3
- Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC00839 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00839
- Origene Custom Protein Services for LINC00839
- Origene shrna and RNAi products in human, mouse, rat for LINC00839
- Browse OriGene Inhibitory RNA Products For LINC00839
- OriGene qPCR primer pairs for LINC00839
- Browse CRISPR knockouts for LINC00839
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00839
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00839
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00839
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00839
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00839
Sources for LINC00839 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB