Aliases for LINC00838 Gene

Subcategory (RNA class) for LINC00838 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00838 Gene

  • Long Intergenic Non-Protein Coding RNA 838 2 3 5
  • LINC00838 2 168
  • HSALNG0077218 167
  • NONHSAG005594 92

External Ids for LINC00838 Gene

Previous GeneCards Identifiers for LINC00838 Gene

  • GC10M034049

Summaries for LINC00838 Gene

GeneCards Summary for LINC00838 Gene

LINC00838 (Long Intergenic Non-Protein Coding RNA 838) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00838 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00838 Gene

Genomics for LINC00838 Gene

GeneHancer (GH) Regulatory Elements for LINC00838 Gene

Promoters and enhancers for LINC00838 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J033772 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 500.7 -0.5 -509 2.3 HDAC2 NANOG SPI1 NR2C1 NR2F2 BMI1 NR2F1 ZFP91 CHD7 EP300 LINC00838 piR-30306-002 piR-61493
GH10J033742 Enhancer 0.7 ENCODE 0.3 +29.4 29445 1.2 MEF2B NBN ELF1 IKZF1 NR2F1 NFATC3 E4F1 TBX21 ESRRA ZNF217 lnc-CCDC7-19 LINC00838
GH10J033760 Enhancer 0.4 Ensembl 0.4 +12.2 12214 0.6 POLR2A SMARCA4 MAFK GATA2 LINC00838 lnc-CCDC7-19
GH10J033748 Enhancer 0.5 Ensembl 0.4 +23.4 23414 1.4 MEF2B GATA3 NR3C1 ZNF133 FOXA1 EBF1 LINC00838 lnc-CCDC7-19
GH10J033735 Enhancer 0.5 Ensembl 0.3 +37.5 37514 0.4 IKZF1 NR2F1 SCRT1 FOS MTA2 IKZF2 RELB SCRT2 lnc-CCDC7-19 LINC00838
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00838 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00838 Gene

Genomic Locations for LINC00838 Gene
chr10:33,759,713-33,772,715
(GRCh38/hg38)
Size:
13,003 bases
Orientation:
Minus strand
chr10:34,048,641-34,061,608
(GRCh37/hg19)
Size:
12,968 bases
Orientation:
Minus strand

Genomic View for LINC00838 Gene

Genes around LINC00838 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00838 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00838 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00838 Gene

Proteins for LINC00838 Gene

Post-translational modifications for LINC00838 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00838 Gene

Domains & Families for LINC00838 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00838 Gene

Function for LINC00838 Gene

Phenotypes From GWAS Catalog for LINC00838 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00838 Gene

Localization for LINC00838 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00838 Gene

Pathways & Interactions for LINC00838 Gene

PathCards logo

SuperPathways for LINC00838 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00838 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00838 Gene

Drugs & Compounds for LINC00838 Gene

No Compound Related Data Available

Transcripts for LINC00838 Gene

mRNA/cDNA for LINC00838 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
6 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00838 Gene

No ASD Table

Relevant External Links for LINC00838 Gene

GeneLoc Exon Structure for
LINC00838

Expression for LINC00838 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00838 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00838 Gene

This gene is overexpressed in Testis (x52.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00838

SOURCE GeneReport for Unigene cluster for LINC00838 Gene:

Hs.568804
genes like me logo Genes that share expression patterns with LINC00838: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00838 Gene

Orthologs for LINC00838 Gene

Evolution for LINC00838 Gene

ENSEMBL:
Gene Tree for LINC00838 (if available)
TreeFam:
Gene Tree for LINC00838 (if available)

No data available for Orthologs for LINC00838 Gene

Paralogs for LINC00838 Gene

No data available for Paralogs for LINC00838 Gene

Variants for LINC00838 Gene

Additional dbSNP identifiers (rs#s) for LINC00838 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00838 Gene

Variant ID Type Subtype PubMed ID
esv3622856 CNV gain 21293372

Additional Variant Information for LINC00838 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00838

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00838 Gene

Disorders for LINC00838 Gene

Additional Disease Information for LINC00838

No disorders were found for LINC00838 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00838 Gene

Publications for LINC00838 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00838 Gene

Sources for LINC00838 Gene