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Aliases for LINC00824 Gene

Subcategory (RNA class) for LINC00824 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00824 Gene

  • Long Intergenic Non-Protein Coding RNA 824 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1263 2 3
  • LINC01263 3

External Ids for LINC00824 Gene

Previous HGNC Symbols for LINC00824 Gene

  • LINC01263

Summaries for LINC00824 Gene

GeneCards Summary for LINC00824 Gene

LINC00824 (Long Intergenic Non-Protein Coding RNA 824) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00824 include Pleural Disease.

Additional gene information for LINC00824 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00824 Gene

Genomics for LINC00824 Gene

GeneHancer (GH) Regulatory Elements for LINC00824 Gene

Promoters and enhancers for LINC00824 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I129345 Enhancer 0.2 ENCODE 4.5 -780.5 -780511 0.2 LINC00824 RN7SKP206 ENSG00000253926
GH08I128551 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.9 9922 6 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF766 LINC00824 GC08P128352 GC08M128187
GH08I128539 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +22.9 22855 4.8 NCOA3 FOXA2 MAX ZNF644 RAD21 RARA ETS1 YY1 HNF4G NR2F6 LINC00824 GC08P128352 GC08M128187
GH08I128513 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 +50.1 50062 1.9 SOX13 FOXA2 JUN BATF RAD21 FOSL1 FOSL2 FOS RUNX3 SOX5 LINC00824 GC08P128352 GC08M128187
GH08I128498 Enhancer 0.9 ENCODE 0.2 +64.4 64392 2.8 ELF3 FOXA2 MLX ARID4B RAD21 RARA YY1 CREM THAP11 MIXL1 LINC00824 GC08P128352 GC08M128187
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00824 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00824 Gene

Genomic Locations for LINC00824 Gene
chr8:128,405,269-128,564,679
(GRCh38/hg38)
Size:
159,411 bases
Orientation:
Minus strand
chr8:129,417,515-129,576,925
(GRCh37/hg19)

Genomic View for LINC00824 Gene

Genes around LINC00824 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00824 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00824 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00824 Gene

Proteins for LINC00824 Gene

Post-translational modifications for LINC00824 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00824 Gene

Domains & Families for LINC00824 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00824 Gene

Function for LINC00824 Gene

Phenotypes From GWAS Catalog for LINC00824 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00824 Gene

Localization for LINC00824 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00824 Gene

Pathways & Interactions for LINC00824 Gene

SuperPathways for LINC00824 Gene

No Data Available

Interacting Proteins for LINC00824 Gene

Gene Ontology (GO) - Biological Process for LINC00824 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00824 Gene

Drugs & Compounds for LINC00824 Gene

No Compound Related Data Available

Transcripts for LINC00824 Gene

mRNA/cDNA for LINC00824 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00824 Gene

No ASD Table

Relevant External Links for LINC00824 Gene

GeneLoc Exon Structure for
LINC00824
ECgene alternative splicing isoforms for
LINC00824

Expression for LINC00824 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00824 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00824 Gene:

LINC00824
genes like me logo Genes that share expression patterns with LINC00824: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00824 Gene

Orthologs for LINC00824 Gene

Evolution for LINC00824 Gene

ENSEMBL:
Gene Tree for LINC00824 (if available)
TreeFam:
Gene Tree for LINC00824 (if available)

No data available for Orthologs for LINC00824 Gene

Paralogs for LINC00824 Gene

No data available for Paralogs for LINC00824 Gene

Variants for LINC00824 Gene

Sequence variations from dbSNP and Humsavar for LINC00824 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000018479 -- 128,452,808(-) A/C genic_downstream_transcript_variant, intron_variant
rs1000047951 -- 128,501,177(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000048966 -- 128,482,642(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000069651 -- 128,411,067(-) T/C/G genic_downstream_transcript_variant, intron_variant
rs1000072101 -- 128,445,690(-) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00824 Gene

Variant ID Type Subtype PubMed ID
dgv190e180 CNV deletion 20482838
dgv255n6 CNV deletion 16902084
dgv3901n106 CNV deletion 24896259
esv1765110 CNV deletion 17803354
esv2019272 CNV deletion 18987734
esv2635480 CNV deletion 19546169
esv2676069 CNV deletion 23128226
esv2737575 CNV deletion 23290073
esv274913 CNV loss 21479260
esv275241 CNV gain+loss 21479260
esv2759641 CNV loss 17122850
esv2761232 CNV loss 21179565
esv3270274 CNV deletion 24192839
esv3520 CNV loss 18987735
esv3544190 CNV deletion 23714750
esv3618795 CNV loss 21293372
esv3618796 CNV loss 21293372
esv9266 CNV loss 19470904
nsv1018320 CNV gain 25217958
nsv1031317 CNV loss 25217958
nsv1075580 CNV deletion 25765185
nsv1152527 CNV deletion 26484159
nsv436577 CNV deletion 17901297
nsv465806 CNV loss 19166990
nsv465807 CNV loss 19166990
nsv476782 CNV novel sequence insertion 20440878
nsv499732 CNV loss 21111241
nsv499795 OTHER inversion 21111241
nsv508527 CNV deletion 20534489
nsv512067 CNV loss 21212237
nsv527164 CNV loss 19592680
nsv612172 CNV loss 21841781
nsv612173 CNV loss 21841781
nsv6390 CNV insertion 18451855
nsv6391 CNV deletion 18451855
nsv7419 OTHER inversion 18451855
nsv957670 CNV deletion 24416366

Additional Variant Information for LINC00824 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00824

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00824 Gene

Disorders for LINC00824 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00824 Gene - From: DISEASES

Disorder Aliases PubMed IDs
pleural disease
  • disorder of pleura
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00824

genes like me logo Genes that share disorders with LINC00824: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00824 Gene

Publications for LINC00824 Gene

  1. Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population. (PMID: 23042114) Hirota T … Tamari M (Nature genetics 2012) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00824 Gene

Sources for LINC00824 Gene

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