Aliases for LINC00709 Gene

Data sources for LINC00709 Gene:

RNA type for LINC00709 Gene

lncRNA

Aliases for LINC00709 Gene

External Ids for LINC00709 Gene

Previous GeneCards Identifiers for LINC00709 Gene

  • GC10P009319

Summaries for LINC00709 Gene

GeneCards Summary for LINC00709 Gene

LINC00709 (Long Intergenic Non-Protein Coding RNA 709) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00709 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00709 Gene

Genomics for LINC00709 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00709 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J009285 Enhancer 0.5 UCNEbase 0.4 +10.3 10295 0.3 GATA2 POLR2A piR-38344-008 LOC101928272 LINC00709
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00709 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00709 Gene

Latest Assembly
chr10:9,275,612-9,287,057
(GRCh38/hg38)
Size:
11,446 bases
Orientation:
Plus strand

Previous Assembly
chr10:9,317,576-9,329,020
(GRCh37/hg19 by Entrez Gene)
Size:
11,445 bases
Orientation:
Plus strand

chr10:9,317,796-9,329,020
(GRCh37/hg19 by Ensembl)
Size:
11,225 bases
Orientation:
Plus strand

Genomic View for LINC00709 Gene

Genes around LINC00709 on UCSC Golden Path with GeneCards custom track
LINC00709 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00709 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00709 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00709 Gene

Proteins for LINC00709 Gene

Post-translational modifications for LINC00709 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00709 Gene

Domains & Families for LINC00709 Gene

Gene Families for LINC00709 Gene

genes like me logo Genes that share domains with LINC00709: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00709 Gene

Function for LINC00709 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00709 Gene

Localization for LINC00709 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00709 Gene

Pathways & Interactions for LINC00709 Gene

PathCards logo

SuperPathways for LINC00709 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00709 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00709 Gene

Drugs & Compounds for LINC00709 Gene

No Compound Related Data Available

Transcripts for LINC00709 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00709 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000C85BE_9606 lncRNA 494 4

Ensembl: ENST00000458168 (view in UCSC) ,

LncBook: HSALNT0158772,

LNCipedia: LINC00709:2,

NONCODE: NONHSAT011342.2,

URS000075DB9C_9606 lncRNA 713 1

RefSeq: NR_108039,

URS0000D5C0E3_9606 lncRNA 714 1

LNCipedia: LINC00709:3,

URS00008B9FAE_9606 lncRNA 713 1

LNCipedia: LINC00709:1,

LINC00709 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00709 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00709 Gene

No ASD Table

Relevant External Links for LINC00709 Gene

GeneLoc Exon Structure for
LINC00709

Expression for LINC00709 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00709 Gene

SOURCE GeneReport for Unigene cluster for LINC00709 Gene:

Hs.649223
genes like me logo Genes that share expression patterns with LINC00709: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00709 Gene

Orthologs for LINC00709 Gene

Evolution for LINC00709 Gene

ENSEMBL:
Gene Tree for LINC00709 (if available)
TreeFam:
Gene Tree for LINC00709 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00709

No data available for Orthologs for LINC00709 Gene

Paralogs for LINC00709 Gene

No data available for Paralogs for LINC00709 Gene

Variants for LINC00709 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00709 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00709 Gene

Variant ID Type Subtype PubMed ID
esv2750976 CNV gain 17911159

Additional Variant Information for LINC00709 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00709
Leiden Open Variation Database (LOVD)
LINC00709

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00709 Gene

Disorders for LINC00709 Gene

Additional Disease Information for LINC00709

No disorders were found for LINC00709 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00709 Gene

Publications for LINC00709 Gene

  1. Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations. (PMID: 24068962) O'Seaghdha CM … Bochud M (PLoS genetics 2013) 3

Products for LINC00709 Gene

Sources for LINC00709 Gene