Aliases for LINC00709 Gene

Subcategory (RNA class) for LINC00709 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00709 Gene

  • Long Intergenic Non-Protein Coding RNA 709 2 3 5
  • LINC00709 2 170
  • HSALNG0076098 169
  • NONHSAG005199 94

External Ids for LINC00709 Gene

Previous GeneCards Identifiers for LINC00709 Gene

  • GC10P009319

Summaries for LINC00709 Gene

GeneCards Summary for LINC00709 Gene

LINC00709 (Long Intergenic Non-Protein Coding RNA 709) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00709 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00709 Gene

Genomics for LINC00709 Gene

GeneHancer (GH) Regulatory Elements for LINC00709 Gene

Promoters and enhancers for LINC00709 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J009285 Enhancer 0.5 UCNEbase 0.4 +10.3 10294 0.3 POLR2A RCOR1 LOC101928272 piR-38344-008 LINC00709
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00709 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00709 Gene

Genomic Locations for LINC00709 Gene
chr10:9,275,613-9,287,057
(GRCh38/hg38)
Size:
11,445 bases
Orientation:
Plus strand
chr10:9,317,576-9,329,076
(GRCh37/hg19)
Size:
11,501 bases
Orientation:
Plus strand

Genomic View for LINC00709 Gene

Genes around LINC00709 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00709 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00709 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00709 Gene

Proteins for LINC00709 Gene

Post-translational modifications for LINC00709 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00709 Gene

Domains & Families for LINC00709 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00709 Gene

Function for LINC00709 Gene

Phenotypes From GWAS Catalog for LINC00709 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00709 Gene

Localization for LINC00709 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00709 Gene

Pathways & Interactions for LINC00709 Gene

PathCards logo

SuperPathways for LINC00709 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00709 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00709 Gene

Drugs & Compounds for LINC00709 Gene

No Compound Related Data Available

Transcripts for LINC00709 Gene

mRNA/cDNA for LINC00709 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) LNCipedia transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00709 Gene

No ASD Table

Relevant External Links for LINC00709 Gene

GeneLoc Exon Structure for
LINC00709
ECgene alternative splicing isoforms for
LINC00709

Expression for LINC00709 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00709 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00709 Gene:

LINC00709

SOURCE GeneReport for Unigene cluster for LINC00709 Gene:

Hs.649223
genes like me logo Genes that share expression patterns with LINC00709: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00709 Gene

Orthologs for LINC00709 Gene

Evolution for LINC00709 Gene

ENSEMBL:
Gene Tree for LINC00709 (if available)
TreeFam:
Gene Tree for LINC00709 (if available)

No data available for Orthologs for LINC00709 Gene

Paralogs for LINC00709 Gene

No data available for Paralogs for LINC00709 Gene

Variants for LINC00709 Gene

Sequence variations from dbSNP and Humsavar for LINC00709 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000041984 -- 9,279,051(+) G/A intron_variant
rs1000095679 -- 9,273,652(+) C/T upstream_transcript_variant
rs1000190750 -- 9,285,253(+) G/T intron_variant
rs1000306001 -- 9,278,780(+) G/A intron_variant
rs1000609872 -- 9,285,012(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00709 Gene

Variant ID Type Subtype PubMed ID
esv2750976 CNV gain 17911159

Additional Variant Information for LINC00709 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00709

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00709 Gene

Disorders for LINC00709 Gene

Additional Disease Information for LINC00709

No disorders were found for LINC00709 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00709 Gene

Publications for LINC00709 Gene

  1. Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations. (PMID: 24068962) O'Seaghdha CM … Bochud M (PLoS genetics 2013) 3 56

Products for LINC00709 Gene

Sources for LINC00709 Gene