Aliases for LINC00708 Gene

Data sources for LINC00708 Gene:

RNA type for LINC00708 Gene

lncRNA

Aliases for LINC00708 Gene

External Ids for LINC00708 Gene

Previous GeneCards Identifiers for LINC00708 Gene

  • GC10M008303

Summaries for LINC00708 Gene

GeneCards Summary for LINC00708 Gene

LINC00708 (Long Intergenic Non-Protein Coding RNA 708) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00708 include Naegeli-Franceschetti-Jadassohn Syndrome and Waardenburg Syndrome, Type 1.

Additional gene information for LINC00708 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00708 Gene

Genomics for LINC00708 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00708 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J008272 Enhancer 0.6 Ensembl ENCODE 6.9 -4.7 -4700 0.9 ZNF189 ZNF362 ZSCAN21 MZF1 ENSG00000226861 HSALNG0076050 LINC00708 ATP5F1C GATA3
GH10J008239 Enhancer 0.7 Ensembl ENCODE 0.3 +29.3 29341 2 ATF2 ZNF316 MAFK MAFG ZFP3 RUNX3 ZSCAN5C HSALNG0076048 LINC00708 GATA3
GH10J008244 Enhancer 0.6 Ensembl ENCODE 0.4 +23.3 23342 3.6 ZNF548 GATA2 CHD2 KIN HSALNG0076048 LINC00708 GATA3
GH10J008242 Enhancer 0.4 Ensembl 0.3 +25.7 25741 0.8 JUND ATF2 CREB1 ATF7 HSALNG0076048 LINC00708 GATA3
GH10J008247 Enhancer 0.3 Ensembl 0.4 +21.1 21141 0.4 SPI1 HSALNG0076048 LINC00708 GATA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00708 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00708 Gene

Latest Assembly
chr10:8,259,330-8,268,342
(GRCh38/hg38)
Size:
9,013 bases
Orientation:
Minus strand

Previous Assembly
chr10:8,301,294-8,310,268
(GRCh37/hg19 by Entrez Gene)
Size:
8,975 bases
Orientation:
Minus strand

chr10:8,301,294-8,310,268
(GRCh37/hg19 by Ensembl)
Size:
8,975 bases
Orientation:
Minus strand

Genomic View for LINC00708 Gene

Genes around LINC00708 on UCSC Golden Path with GeneCards custom track
LINC00708 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00708 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00708 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00708 Gene

Proteins for LINC00708 Gene

Post-translational modifications for LINC00708 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00708 Gene

Domains & Families for LINC00708 Gene

Gene Families for LINC00708 Gene

genes like me logo Genes that share domains with LINC00708: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00708 Gene

Function for LINC00708 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00708 Gene

Localization for LINC00708 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00708 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00708 Gene

Pathways & Interactions for LINC00708 Gene

PathCards logo

SuperPathways for LINC00708 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00708 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00708 Gene

Drugs & Compounds for LINC00708 Gene

No Compound Related Data Available

Transcripts for LINC00708 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00708 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000048254E_9606 lncRNA 367 4

Ensembl: ENST00000454056 (view in UCSC) ,

LncBook: HSALNT0158648,

LNCipedia: LINC00708:4,

NONCODE: NONHSAT011321.2,

URS0000310885_9606 lncRNA 921 3

Ensembl: ENST00000428165 (view in UCSC) ,

LNCipedia: LINC00708:2,

NONCODE: NONHSAT011320.2,

URS0000EF119D_9606 lncRNA 963 1

Ensembl: ENST00000657469 (view in UCSC) ,

URS000075CA5F_9606 lncRNA 915 1

RefSeq: NR_108058,

URS00008BECCE_9606 lncRNA 916 2

LncBook: HSALNT0158651,

LNCipedia: LINC00708:1,

LINC00708 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00708 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00708 Gene

No ASD Table

Relevant External Links for LINC00708 Gene

GeneLoc Exon Structure for
LINC00708

Expression for LINC00708 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00708 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00708 Gene

This gene is overexpressed in Testis (x48.6) and Skin - Not Sun Exposed (Suprapubic) (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00708

SOURCE GeneReport for Unigene cluster for LINC00708 Gene:

Hs.258979
genes like me logo Genes that share expression patterns with LINC00708: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00708 Gene

Orthologs for LINC00708 Gene

Evolution for LINC00708 Gene

ENSEMBL:
Gene Tree for LINC00708 (if available)
TreeFam:
Gene Tree for LINC00708 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00708

No data available for Orthologs for LINC00708 Gene

Paralogs for LINC00708 Gene

No data available for Paralogs for LINC00708 Gene

Variants for LINC00708 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00708 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC00708 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00708
Leiden Open Variation Database (LOVD)
LINC00708

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00708 Gene

Disorders for LINC00708 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LINC00708 Gene - From: COP

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00708

genes like me logo Genes that share disorders with LINC00708: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00708 Gene

Publications for LINC00708 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00708 Gene

Sources for LINC00708 Gene