Aliases for LINC00707 Gene

Data sources for LINC00707 Gene:

RNA type for LINC00707 Gene

lncRNA

Aliases for LINC00707 Gene

External Ids for LINC00707 Gene

Previous GeneCards Identifiers for LINC00707 Gene

  • GC10P006823

Summaries for LINC00707 Gene

GeneCards Summary for LINC00707 Gene

LINC00707 (Long Intergenic Non-Protein Coding RNA 707) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00707 include Lung Cancer Susceptibility 3 and Melanoma.

Additional gene information for LINC00707 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00707 Gene

Genomics for LINC00707 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around LINC00707 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00707 Gene

Latest Assembly
chr10:6,779,549-6,882,912
(GRCh38/hg38)
Size:
103,364 bases
Orientation:
Plus strand

Previous Assembly
chr10:6,821,560-6,884,868
(GRCh37/hg19 by Entrez Gene)
Size:
63,309 bases
Orientation:
Plus strand

chr10:6,821,560-6,884,868
(GRCh37/hg19 by Ensembl)
Size:
63,309 bases
Orientation:
Plus strand

Genomic View for LINC00707 Gene

Genes around LINC00707 on UCSC Golden Path with GeneCards custom track
LINC00707 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00707 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00707 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00707 Gene

Proteins for LINC00707 Gene

Post-translational modifications for LINC00707 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00707 Gene

Domains & Families for LINC00707 Gene

Gene Families for LINC00707 Gene

genes like me logo Genes that share domains with LINC00707: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00707 Gene

Function for LINC00707 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00707 Gene

Localization for LINC00707 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00707 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00707 Gene

Pathways & Interactions for LINC00707 Gene

PathCards logo

SuperPathways for LINC00707 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00707 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00707 Gene

Drugs & Compounds for LINC00707 Gene

No Compound Related Data Available

Transcripts for LINC00707 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00707 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB7617_9606 lncRNA 3105 1

Ensembl: ENST00000650314 (view in UCSC) ,

URS0000DBB19F_9606 lncRNA 3098 1

Ensembl: ENST00000436383 (view in UCSC) ,

URS000075C99D_9606 lncRNA 3070 1

RefSeq: NR_038291,

URS0000DB81FC_9606 lncRNA 1699 1

Ensembl: ENST00000648637 (view in UCSC) ,

URS0000DB7B8C_9606 lncRNA 1647 1

Ensembl: ENST00000649029 (view in UCSC) ,

LINC00707 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00707 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00707 Gene

No ASD Table

Relevant External Links for LINC00707 Gene

GeneLoc Exon Structure for
LINC00707

Expression for LINC00707 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00707 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00707 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00707

SOURCE GeneReport for Unigene cluster for LINC00707 Gene:

Hs.498571
genes like me logo Genes that share expression patterns with LINC00707: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00707 Gene

Orthologs for LINC00707 Gene

Evolution for LINC00707 Gene

ENSEMBL:
Gene Tree for LINC00707 (if available)
TreeFam:
Gene Tree for LINC00707 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00707

No data available for Orthologs for LINC00707 Gene

Paralogs for LINC00707 Gene

No data available for Paralogs for LINC00707 Gene

Variants for LINC00707 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00707 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00707 Gene

Variant ID Type Subtype PubMed ID
dgv354n106 CNV duplication 24896259
dgv668n100 CNV loss 25217958
dgv89e201 CNV deletion 23290073
dgv90e201 CNV deletion 23290073
dgv951n54 CNV gain 21841781
esv1088041 CNV insertion 17803354
esv1437046 CNV insertion 17803354
esv1768453 CNV deletion 17803354
esv23743 CNV gain 19812545
esv2518907 CNV loss 19546169
esv2732095 CNV deletion 23290073
esv2732106 CNV deletion 23290073
esv2732140 CNV deletion 23290073
esv2732184 CNV deletion 23290073
esv3329049 CNV insertion 20981092
esv3576050 CNV gain 25503493
esv3622257 CNV loss 21293372
esv3891750 CNV gain 25118596
esv3891751 CNV gain 25118596
nsv1042376 CNV gain 25217958
nsv1068666 CNV deletion 25765185
nsv1075414 CNV duplication 25765185
nsv1110886 OTHER inversion 24896259
nsv1113245 CNV deletion 24896259
nsv1118158 CNV deletion 24896259
nsv1122486 CNV deletion 24896259
nsv1125329 OTHER inversion 24896259
nsv1130992 CNV deletion 24896259
nsv1133967 CNV deletion 24896259
nsv1137870 CNV deletion 24896259
nsv1143490 CNV deletion 24896259
nsv1149318 CNV duplication 26484159
nsv24770 CNV deletion 16902084
nsv466729 CNV gain 19166990
nsv470918 CNV gain 18288195
nsv512144 CNV loss 21212237
nsv517486 CNV gain+loss 19592680
nsv549929 CNV gain+loss 21841781
nsv7198 OTHER inversion 18451855
nsv951244 CNV deletion 24416366
nsv956529 CNV deletion 24416366
nsv957733 CNV insertion 24416366

Additional Variant Information for LINC00707 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00707
Leiden Open Variation Database (LOVD)
LINC00707

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00707 Gene

Disorders for LINC00707 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00707 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
melanoma
  • malignant melanoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00707

genes like me logo Genes that share disorders with LINC00707: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00707 Gene

Publications for LINC00707 Gene

  1. The Long Intergenic Noncoding RNA 00707 Promotes Lung Adenocarcinoma Cell Proliferation and Migration by Regulating Cdc42. (PMID: 29482190) Ma T … Zhang Z (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 2 3 72
  2. Long intergenic noncoding RNA 00707 promotes colorectal cancer cell proliferation and metastasis by sponging miR-206. (PMID: 31213848) Zhu H … Wang Y (OncoTargets and therapy 2019) 2 3
  3. LncRNA LINC00707 promotes osteogenic differentiation of hBMSCs through the Wnt/β-catenin pathway activated by LINC00707/miR-145/LRP5 axis. (PMID: 31957814) Cai WL … Liu Y (European review for medical and pharmacological sciences 2020) 3
  4. LINC00707 contributes to hepatocellular carcinoma progression via sponging miR-206 to increase CDK14. (PMID: 30488589) Tu J … Ji J (Journal of cellular physiology 2019) 3
  5. The long intergenic non-protein coding RNA 707 promotes proliferation and metastasis of gastric cancer by interacting with mRNA stabilizing protein HuR. (PMID: 30502359) Xie M … De W (Cancer letters 2019) 3

Products for LINC00707 Gene

Sources for LINC00707 Gene