Aliases for LINC00705 Gene

Data sources for LINC00705 Gene:

RNA type for LINC00705 Gene

lncRNA

Aliases for LINC00705 Gene

External Ids for LINC00705 Gene

Previous GeneCards Identifiers for LINC00705 Gene

  • GC10P004699

Summaries for LINC00705 Gene

GeneCards Summary for LINC00705 Gene

LINC00705 (Long Intergenic Non-Protein Coding RNA 705) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00705 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00705 Gene

Genomics for LINC00705 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00705 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J004651 Enhancer 1 Ensembl dbSUPER 250.7 +1.7 1689 2.4 ZNF600 ZNF580 ATF2 ZIC2 FEZF1 ZNF639 ZNF341 ZEB1 KLF7 FOXA2 LINC00705 KLF6 lnc-AKR1E2-8 LOC105376373 MANCR AKR1E2
GH10J004648 Enhancer 0.9 Ensembl ENCODE dbSUPER 250.7 -1.0 -1001 2.7 ZNF600 RAD21 ZNF189 FOXA1 SP7 MNT ZBTB6 PRDM10 POLR2A CEBPB LINC00705 lnc-AKR1E2-8 MANCR AKR1E2 KLF6
GH10J004201 Enhancer 0.6 Ensembl ENCODE 5.3 -448.7 -448692 1.6 CEBPB GATA2 HLF HSALNG0075775 LINC00702 LINC00705 lnc-AKR1E2-15 KLF6 AKR1E2
GH10J004669 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +23.3 23340 10.5 CEBPA JUND CEBPB MAX EP300 FOXA2 REST MAFF STAT3 FOSL2 MANCR ENSG00000229672 AKR1E2 LOC105376373 HSALNG0075802 LINC00705 KLF6
GH10J004660 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.3 12259 5.7 NCOR1 MYC ZNF600 JUND ZNF580 ZNF592 ATF2 CEBPA ATF3 ZNF10 LOC105376373 LINC00705 MANCR AKR1E2 KLF6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00705 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00705 Gene

Latest Assembly
chr10:4,651,112-4,683,084
(GRCh38/hg38)
Size:
31,973 bases
Orientation:
Plus strand

Previous Assembly
chr10:4,698,348-4,704,611
(GRCh37/hg19 by Entrez Gene)
Size:
6,264 bases
Orientation:
Plus strand

chr10:4,697,619-4,704,611
(GRCh37/hg19 by Ensembl)
Size:
6,993 bases
Orientation:
Plus strand

Genomic View for LINC00705 Gene

Genes around LINC00705 on UCSC Golden Path with GeneCards custom track
LINC00705 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00705 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00705 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00705 Gene

Proteins for LINC00705 Gene

Post-translational modifications for LINC00705 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00705 Gene

Domains & Families for LINC00705 Gene

Gene Families for LINC00705 Gene

genes like me logo Genes that share domains with LINC00705: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00705 Gene

Function for LINC00705 Gene

Phenotypes From GWAS Catalog for LINC00705 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00705 Gene

Localization for LINC00705 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00705 Gene

Pathways & Interactions for LINC00705 Gene

PathCards logo

SuperPathways for LINC00705 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00705 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00705 Gene

Drugs & Compounds for LINC00705 Gene

No Compound Related Data Available

Transcripts for LINC00705 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00705 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000621744_9606 lncRNA 1748 3

Ensembl: ENST00000417883 (view in UCSC) ,

LNCipedia: LINC00705:1,

NONCODE: NONHSAT011109.2,

URS0000EF321A_9606 lncRNA 1934 1

Ensembl: ENST00000665287 (view in UCSC) ,

URS0000EEED57_9606 lncRNA 1347 1

Ensembl: ENST00000654330 (view in UCSC) ,

URS0000EF2808_9606 lncRNA 1326 1

Ensembl: ENST00000661397 (view in UCSC) ,

URS0000EF19F0_9606 lncRNA 1204 1

Ensembl: ENST00000653457 (view in UCSC) ,

LINC00705 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00705 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00705 Gene

No ASD Table

Relevant External Links for LINC00705 Gene

GeneLoc Exon Structure for
LINC00705

Expression for LINC00705 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00705 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00705 Gene

This gene is overexpressed in Testis (x44.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00705

SOURCE GeneReport for Unigene cluster for LINC00705 Gene:

Hs.121365
genes like me logo Genes that share expression patterns with LINC00705: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00705 Gene

Orthologs for LINC00705 Gene

Evolution for LINC00705 Gene

ENSEMBL:
Gene Tree for LINC00705 (if available)
TreeFam:
Gene Tree for LINC00705 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00705

No data available for Orthologs for LINC00705 Gene

Paralogs for LINC00705 Gene

No data available for Paralogs for LINC00705 Gene

Variants for LINC00705 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00705 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00705 Gene

Variant ID Type Subtype PubMed ID
nsv511436 CNV loss 21212237

Additional Variant Information for LINC00705 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00705
Leiden Open Variation Database (LOVD)
LINC00705

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00705 Gene

Disorders for LINC00705 Gene

Additional Disease Information for LINC00705

No disorders were found for LINC00705 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00705 Gene

Publications for LINC00705 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3

Products for LINC00705 Gene

Sources for LINC00705 Gene