Aliases for LINC00703 Gene

Data sources for LINC00703 Gene:

RNA type for LINC00703 Gene

lncRNA

Aliases for LINC00703 Gene

External Ids for LINC00703 Gene

Summaries for LINC00703 Gene

GeneCards Summary for LINC00703 Gene

LINC00703 (Long Intergenic Non-Protein Coding RNA 703) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00703 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00703 Gene

Genomics for LINC00703 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00703 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J004383 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.2 -240 1.6 PRDM6 BCL6 BHLHE40 ZNF366 PKNOX1 RAD21 POLR2A CEBPB ZSCAN5C LINC00703 HSALNG0075784-001 lnc-AKR1E2-9 HSALNG0075784-003 lnc-KLF6-15 LOC105376372 AKR1E2 KLF6
GH10J004406 Promoter 0.3 EPDnew 250.4 +22.2 22215 0.1 HSALNG0075786 LOC105376372 lnc-AKR1C2-10-001 LINC00703 lnc-AKR1C2-10-002 AKR1E2 KLF6
GH10J004407 Enhancer 0.7 Ensembl ENCODE 0.4 +23.8 23803 1.5 CEBPB EP300 PRDM10 MAFK ATF4 ZNF518A ATF3 TRIM24 CEBPG HSALNG0075786 LOC105376372 lnc-AKR1C2-10-001 lnc-AKR1C2-10-002 piR-48209-045 LINC00703 AKR1E2 KLF6
GH10J004399 Enhancer 0.3 ENCODE 0.4 +15.5 15544 0.9 NFE2 NFE2L2 HSALNG0075784-003 lnc-KLF6-15 HSALNG0075786 LOC105376372 lnc-AKR1C2-10-001 LINC00703 lnc-AKR1E2-9 AKR1E2 KLF6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00703 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00703 Gene

Latest Assembly
chr10:4,384,245-4,416,617
(GRCh38/hg38)
Size:
32,373 bases
Orientation:
Plus strand

Previous Assembly
chr10:4,426,438-4,452,804
(GRCh37/hg19 by Entrez Gene)
Size:
26,367 bases
Orientation:
Plus strand

chr10:4,426,438-4,452,804
(GRCh37/hg19 by Ensembl)
Size:
26,367 bases
Orientation:
Plus strand

Genomic View for LINC00703 Gene

Genes around LINC00703 on UCSC Golden Path with GeneCards custom track
LINC00703 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00703 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00703 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00703 Gene

Proteins for LINC00703 Gene

Post-translational modifications for LINC00703 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00703 Gene

Domains & Families for LINC00703 Gene

Gene Families for LINC00703 Gene

genes like me logo Genes that share domains with LINC00703: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00703 Gene

Function for LINC00703 Gene

Phenotypes From GWAS Catalog for LINC00703 Gene

Phenotypes for LINC00703 Gene

genes like me logo Genes that share phenotypes with LINC00703: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00703 Gene

Localization for LINC00703 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00703 Gene

Pathways & Interactions for LINC00703 Gene

PathCards logo

SuperPathways for LINC00703 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00703 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00703 Gene

Drugs & Compounds for LINC00703 Gene

No Compound Related Data Available

Transcripts for LINC00703 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00703 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000581E0C_9606 lncRNA 2392 5

RefSeq: NR_108055,

Ensembl: ENST00000454152 (view in UCSC) ,

LncBook: HSALNT0157985,

LNCipedia: LINC00703:1,

NONCODE: NONHSAT011091.2,

URS0000032605_9606 lncRNA 871 4

Ensembl: ENST00000434902 (view in UCSC) ,

LncBook: HSALNT0157995,

LNCipedia: LINC00703:5,

NONCODE: NONHSAT011096.2,

URS000075F11B_9606 lncRNA 2496 3

RefSeq: NR_108054,

LNCipedia: LINC00703:2,

NONCODE: NONHSAT154992.1,

URS000075A84E_9606 lncRNA 2263 2

RefSeq: NR_108056,

LNCipedia: LINC00703:3,

URS0000EF44B4_9606 lncRNA 2308 1

Ensembl: ENST00000655424 (view in UCSC) ,

LINC00703 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00703 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00703 Gene

No ASD Table

Relevant External Links for LINC00703 Gene

GeneLoc Exon Structure for
LINC00703

Expression for LINC00703 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00703 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00703 Gene

This gene is overexpressed in Testis (x40.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00703

SOURCE GeneReport for Unigene cluster for LINC00703 Gene:

Hs.158438
genes like me logo Genes that share expression patterns with LINC00703: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00703 Gene

Orthologs for LINC00703 Gene

Evolution for LINC00703 Gene

ENSEMBL:
Gene Tree for LINC00703 (if available)
TreeFam:
Gene Tree for LINC00703 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00703

No data available for Orthologs for LINC00703 Gene

Paralogs for LINC00703 Gene

No data available for Paralogs for LINC00703 Gene

Variants for LINC00703 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00703 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00703 Gene

Variant ID Type Subtype PubMed ID
esv21787 CNV loss 19812545
esv2421620 CNV deletion 20811451
esv2661579 CNV deletion 23128226
esv3622195 CNV loss 21293372
nsv436120 CNV deletion 17901297
nsv437654 CNV loss 16327808
nsv510210 OTHER sequence alteration 20534489
nsv516066 CNV loss 19592680
nsv8598 CNV loss 18304495

Additional Variant Information for LINC00703 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00703
Leiden Open Variation Database (LOVD)
LINC00703

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00703 Gene

Disorders for LINC00703 Gene

Additional Disease Information for LINC00703

No disorders were found for LINC00703 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00703 Gene

Publications for LINC00703 Gene

  1. LINC00703 Acts as a Tumor Suppressor via Regulating miR-181a/KLF6 Axis in Gastric Cancer. (PMID: 31897348) Yang H … Qian Z (Journal of gastric cancer 2019) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00703 Gene

Sources for LINC00703 Gene