Aliases for LINC00702 Gene

Data sources for LINC00702 Gene:

RNA type for LINC00702 Gene

lncRNA

Aliases for LINC00702 Gene

External Ids for LINC00702 Gene

Previous GeneCards Identifiers for LINC00702 Gene

  • GC10M004280
  • GC10M004243

Summaries for LINC00702 Gene

GeneCards Summary for LINC00702 Gene

LINC00702 (Long Intergenic Non-Protein Coding RNA 702) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00702 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00702 Gene

Genomics for LINC00702 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00702 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J004239 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 264.8 +26.0 25968 5.6 ZNF600 JUND CEBPB MAX EP300 STAT3 RAD21 MAFK ATF4 BHLHE40 LINC00702 lnc-AKR1E2-15 LOC105376369 KLF6 AKR1E2
GH10J004269 Enhancer 0.9 Ensembl ENCODE dbSUPER 250.7 -1.9 -1896 1.2 JUND ZNF217 FOXA1 CREB1 ATF7 TARDBP GABPA ELK1 LINC00702 lnc-AKR1E2-3 KLF6 AKR1E2
GH10J003835 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 13.6 +432.4 432380 1.8 IKZF1 NFIC EBF1 TAL1 PRDM6 SRF RB1 TCF12 RAD21 ATF4 lnc-KLF6-20 KLF6 LINC00702 ENSG00000229672 lnc-KLF6-19 AKR1E2
GH10J004245 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 15 +21.9 21852 2.3 JUND MAFK BHLHE40 ZNF366 POLR2A FOS ZNF512 EP300 LOC105376369 LINC00702 lnc-AKR1E2-15 KLF6 AKR1E2
GH10J004253 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.6 +14.1 14088 2.4 JUND CEBPB EP300 STAT3 PRDM6 MAFK ZNF362 ATF2 SP7 ZEB2 LINC00702 HSALNG0075777 LOC105376369 lnc-AKR1E2-15 KLF6 AKR1E2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00702 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00702 Gene

Latest Assembly
chr10:4,191,097-4,268,689
(GRCh38/hg38)
Size:
77,593 bases
Orientation:
Minus strand

Previous Assembly
chr10:4,249,068-4,286,104
(GRCh37/hg19 by Entrez Gene)
Size:
37,037 bases
Orientation:
Minus strand

chr10:4,243,333-4,286,104
(GRCh37/hg19 by Ensembl)
Size:
42,772 bases
Orientation:
Minus strand

Genomic View for LINC00702 Gene

Genes around LINC00702 on UCSC Golden Path with GeneCards custom track
LINC00702 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00702 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00702 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00702 Gene

Proteins for LINC00702 Gene

Post-translational modifications for LINC00702 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00702 Gene

Domains & Families for LINC00702 Gene

Gene Families for LINC00702 Gene

genes like me logo Genes that share domains with LINC00702: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00702 Gene

Function for LINC00702 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00702 Gene

Localization for LINC00702 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00702 Gene

Pathways & Interactions for LINC00702 Gene

PathCards logo

SuperPathways for LINC00702 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00702 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00702 Gene

Drugs & Compounds for LINC00702 Gene

No Compound Related Data Available

Transcripts for LINC00702 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00702 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000445A70_9606 lncRNA 6303 3

Ensembl: ENST00000608792 (view in UCSC) ,

LNCipedia: LINC00702:2,

NONCODE: NONHSAT156543.1,

URS000075E104_9606 lncRNA 568 3

RefSeq: NR_108040,

LncBook: HSALNT0157937,

LNCipedia: LINC00702:1,

URS00004FBDFF_9606 lncRNA 446 3

Ensembl: ENST00000418372 (view in UCSC) ,

LNCipedia: LINC00702:3,

NONCODE: NONHSAT011087.2,

URS0000EF3352_9606 lncRNA 2074 1

Ensembl: ENST00000665013 (view in UCSC) ,

URS0000EEED0A_9606 lncRNA 1983 1

Ensembl: ENST00000662921 (view in UCSC) ,

LINC00702 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00702 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00702 Gene

No ASD Table

Relevant External Links for LINC00702 Gene

GeneLoc Exon Structure for
LINC00702

Expression for LINC00702 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00702 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00702 Gene

This gene is overexpressed in Artery - Tibial (x7.2), Artery - Aorta (x5.7), Artery - Coronary (x5.4), and Esophagus - Muscularis (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00702

SOURCE GeneReport for Unigene cluster for LINC00702 Gene:

Hs.741423
genes like me logo Genes that share expression patterns with LINC00702: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00702 Gene

Orthologs for LINC00702 Gene

Evolution for LINC00702 Gene

ENSEMBL:
Gene Tree for LINC00702 (if available)
TreeFam:
Gene Tree for LINC00702 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00702

No data available for Orthologs for LINC00702 Gene

Paralogs for LINC00702 Gene

No data available for Paralogs for LINC00702 Gene

Variants for LINC00702 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00702 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00702 Gene

Variant ID Type Subtype PubMed ID
dgv662n100 CNV gain 25217958
esv3622188 CNV loss 21293372
nsv1051538 CNV gain 25217958
nsv1130906 CNV deletion 24896259
nsv1147368 CNV deletion 26484159

Additional Variant Information for LINC00702 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00702
Leiden Open Variation Database (LOVD)
LINC00702

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00702 Gene

Disorders for LINC00702 Gene

Additional Disease Information for LINC00702

No disorders were found for LINC00702 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00702 Gene

Publications for LINC00702 Gene

  1. LINC00702/miR-4652-3p/ZEB1 axis promotes the progression of malignant meningioma through activating Wnt/β-catenin pathway. (PMID: 30849635) Li T … Han X (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3
  2. LINC00702 accelerates the progression of ovarian cancer through interacting with EZH2 to inhibit the transcription of KLF2. (PMID: 31389610) Wang L … Xi XW (European review for medical and pharmacological sciences 2019) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for LINC00702 Gene

Sources for LINC00702 Gene