Aliases for LINC00702 Gene

Subcategory (RNA class) for LINC00702 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00702 Gene

  • Long Intergenic Non-Protein Coding RNA 702 2 3 5
  • LINC00702 2 168
  • HSALNG0075773 167
  • NONHSAG005060 92
  • NONHSAG005063 92
  • NONHSAG005061 92
  • Lnc-KLF6-14 168

External Ids for LINC00702 Gene

Previous GeneCards Identifiers for LINC00702 Gene

  • GC10M004280
  • GC10M004243

Summaries for LINC00702 Gene

GeneCards Summary for LINC00702 Gene

LINC00702 (Long Intergenic Non-Protein Coding RNA 702) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00702 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00702 Gene

Genomics for LINC00702 Gene

GeneHancer (GH) Regulatory Elements for LINC00702 Gene

Promoters and enhancers for LINC00702 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J004239 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 515.2 +1.2 1191 5.6 EP300 JUND FOS NR2F2 ZNF184 POLR2A FOSL2 CEBPB JUN FOSL1 LINC00702 lnc-AKR1E2-15
GH10J003885 Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12 +351.2 351187 14.6 EP300 ZNF217 TCF12 POLR2G USF1 SP1 NCOR1 GTF2E2 JUND FOS KLF6 LINC00702 LINC02660 PITRM1 lnc-KLF6-2 lnc-KLF6-3 lnc-PFKP-41 lnc-PFKP-40
GH10J004245 Enhancer 1 FANTOM5 ENCODE dbSUPER 15.3 -2.9 -2925 2.3 JUND FOS USF1 MAFK TAF1 GATA2 JUN BHLHE40 ZNF214 ZNF366 LOC105376369 LINC00702 lnc-AKR1E2-15
GH10J004249 Enhancer 0.9 Ensembl ENCODE dbSUPER 14.4 -6.3 -6326 1.7 ATF2 CREB1 FOS SRF STAT3 POLR2A ATF7 ZNF394 MYC LINC00702 LOC105376369 lnc-AKR1E2-15 HSALNG0075779
GH10J004253 Enhancer 0.9 Ensembl ENCODE dbSUPER 12.6 -10.7 -10689 2.4 JUND FOS TRIM28 CREB1 CEBPB JUN MAFK EP300 CEBPG STAT3 LINC00702 LOC105376369 lnc-AKR1E2-15 HSALNG0075779
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00702 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00702 Gene

Genomic Locations for LINC00702 Gene
chr10:4,191,098-4,243,912
(GRCh38/hg38)
Size:
52,815 bases
Orientation:
Minus strand
chr10:4,243,333-4,286,104
(GRCh37/hg19)
Size:
42,772 bases
Orientation:
Minus strand

Genomic View for LINC00702 Gene

Genes around LINC00702 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00702 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00702 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00702 Gene

Proteins for LINC00702 Gene

Post-translational modifications for LINC00702 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00702 Gene

Domains & Families for LINC00702 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00702 Gene

Function for LINC00702 Gene

Phenotypes From GWAS Catalog for LINC00702 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00702 Gene

Localization for LINC00702 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00702 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00702 Gene

Pathways & Interactions for LINC00702 Gene

PathCards logo

SuperPathways for LINC00702 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00702 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00702 Gene

Drugs & Compounds for LINC00702 Gene

No Compound Related Data Available

Transcripts for LINC00702 Gene

mRNA/cDNA for LINC00702 Gene

35 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
16 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
12 LncBook transcripts :
18 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00702 Gene

No ASD Table

Relevant External Links for LINC00702 Gene

GeneLoc Exon Structure for
LINC00702

Expression for LINC00702 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00702 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00702 Gene

This gene is overexpressed in Artery - Tibial (x7.2), Artery - Aorta (x5.7), Artery - Coronary (x5.4), and Esophagus - Muscularis (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00702

SOURCE GeneReport for Unigene cluster for LINC00702 Gene:

Hs.741423
genes like me logo Genes that share expression patterns with LINC00702: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00702 Gene

Orthologs for LINC00702 Gene

Evolution for LINC00702 Gene

ENSEMBL:
Gene Tree for LINC00702 (if available)
TreeFam:
Gene Tree for LINC00702 (if available)

No data available for Orthologs for LINC00702 Gene

Paralogs for LINC00702 Gene

No data available for Paralogs for LINC00702 Gene

Variants for LINC00702 Gene

Additional dbSNP identifiers (rs#s) for LINC00702 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00702 Gene

Variant ID Type Subtype PubMed ID
dgv662n100 CNV gain 25217958
esv3622188 CNV loss 21293372
nsv1051538 CNV gain 25217958
nsv1130906 CNV deletion 24896259
nsv1147368 CNV deletion 26484159

Additional Variant Information for LINC00702 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00702

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00702 Gene

Disorders for LINC00702 Gene

Additional Disease Information for LINC00702

No disorders were found for LINC00702 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00702 Gene

Publications for LINC00702 Gene

  1. LINC00702/miR-4652-3p/ZEB1 axis promotes the progression of malignant meningioma through activating Wnt/β-catenin pathway. (PMID: 30849635) Li T … Han X (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 54

Products for LINC00702 Gene

Sources for LINC00702 Gene