Aliases for LINC00701 Gene

Subcategory (RNA class) for LINC00701 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00701 Gene

  • Long Intergenic Non-Protein Coding RNA 701 2 3 5
  • LINC00701 2 168
  • NONHSAG005002 92
  • HSALNG0075598 167
  • HSALNG0075599 167

External Ids for LINC00701 Gene

Summaries for LINC00701 Gene

GeneCards Summary for LINC00701 Gene

LINC00701 (Long Intergenic Non-Protein Coding RNA 701) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00701 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00701 Gene

Genomics for LINC00701 Gene

GeneHancer (GH) Regulatory Elements for LINC00701 Gene

Promoters and enhancers for LINC00701 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J002280 Enhancer 0.4 Ensembl 0.3 +33.7 33675 2.4 SMARCA4 HLF EZH2 STAT3 piR-39858-039 LINC00701
GH10J002295 Enhancer 0.3 Ensembl 0.4 +19.1 19075 1.2 TCF12 LINC00701 piR-39858-039
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00701 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00701 Gene

Genomic Locations for LINC00701 Gene
chr10:2,295,083-2,315,076
(GRCh38/hg38)
Size:
19,994 bases
Orientation:
Minus strand
chr10:2,342,513-2,357,269
(GRCh37/hg19)
Size:
14,757 bases
Orientation:
Minus strand

Genomic View for LINC00701 Gene

Genes around LINC00701 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00701 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00701 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00701 Gene

Proteins for LINC00701 Gene

Post-translational modifications for LINC00701 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00701 Gene

Domains & Families for LINC00701 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00701 Gene

Function for LINC00701 Gene

Phenotypes From GWAS Catalog for LINC00701 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00701 Gene

Localization for LINC00701 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00701 Gene

Pathways & Interactions for LINC00701 Gene

PathCards logo

SuperPathways for LINC00701 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00701 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00701 Gene

Drugs & Compounds for LINC00701 Gene

No Compound Related Data Available

Transcripts for LINC00701 Gene

mRNA/cDNA for LINC00701 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00701 Gene

No ASD Table

Relevant External Links for LINC00701 Gene

GeneLoc Exon Structure for
LINC00701

Expression for LINC00701 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00701 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00701 Gene

This gene is overexpressed in Testis (x53.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00701

SOURCE GeneReport for Unigene cluster for LINC00701 Gene:

Hs.521270
genes like me logo Genes that share expression patterns with LINC00701: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00701 Gene

Orthologs for LINC00701 Gene

Evolution for LINC00701 Gene

ENSEMBL:
Gene Tree for LINC00701 (if available)
TreeFam:
Gene Tree for LINC00701 (if available)

No data available for Orthologs for LINC00701 Gene

Paralogs for LINC00701 Gene

No data available for Paralogs for LINC00701 Gene

Variants for LINC00701 Gene

Additional dbSNP identifiers (rs#s) for LINC00701 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00701 Gene

Variant ID Type Subtype PubMed ID
esv3576028 CNV gain 25503493
nsv1038386 CNV loss 25217958
nsv1043468 CNV gain 25217958
nsv1045453 CNV loss 25217958
nsv1045910 CNV gain 25217958
nsv549798 CNV gain 21841781
nsv549799 CNV gain 21841781
nsv825214 CNV gain 20364138
nsv831767 CNV gain 17160897
nsv831768 CNV gain 17160897

Additional Variant Information for LINC00701 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00701

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00701 Gene

Disorders for LINC00701 Gene

Additional Disease Information for LINC00701

No disorders were found for LINC00701 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00701 Gene

Publications for LINC00701 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00701 Gene

Sources for LINC00701 Gene