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Aliases for LINC00700 Gene

Subcategory (RNA class) for LINC00700 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00700 Gene

  • Long Intergenic Non-Protein Coding RNA 700 2 3 5

External Ids for LINC00700 Gene

Summaries for LINC00700 Gene

GeneCards Summary for LINC00700 Gene

LINC00700 (Long Intergenic Non-Protein Coding RNA 700) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00700 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00700 Gene

Genomics for LINC00700 Gene

GeneHancer (GH) Regulatory Elements for LINC00700 Gene

Promoters and enhancers for LINC00700 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J001976 Enhancer 0.6 dbSUPER 16.3 +35.9 35891 3.7 JUN MAX CEBPB EP300 RAD21 RFX5 JUND MAFF POLR2A STAT3 LINC00700 RNU6-889P LOC105376346
GH10J001964 Enhancer 0.7 dbSUPER 10.6 +46.4 46361 7.3 JUN MAX RAD21 BRCA1 ELK1 POLR2A SMC3 RCOR1 FOS NFE2L2 LINC00700 LOC105376346 PIR41208
GH10J001972 Enhancer 0.2 dbSUPER 10.6 +41.1 41132 2.4 LOC105376346 LINC00700
GH10J002070 Enhancer 0.2 FANTOM5 0.2 -56.0 -56026 0.2 ENSG00000226694 LINC00700
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00700 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00700 Gene

Genomic Locations for LINC00700 Gene
chr10:2,005,473-2,014,348
(GRCh38/hg38)
Size:
8,876 bases
Orientation:
Minus strand
chr10:2,047,667-2,056,542
(GRCh37/hg19)
Size:
8,876 bases
Orientation:
Minus strand

Genomic View for LINC00700 Gene

Genes around LINC00700 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00700 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00700 Gene

Proteins for LINC00700 Gene

Post-translational modifications for LINC00700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00700 Gene

Domains & Families for LINC00700 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00700 Gene

Function for LINC00700 Gene

Phenotypes From GWAS Catalog for LINC00700 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00700 Gene

Localization for LINC00700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00700 Gene

Pathways & Interactions for LINC00700 Gene

SuperPathways for LINC00700 Gene

No Data Available

Interacting Proteins for LINC00700 Gene

Gene Ontology (GO) - Biological Process for LINC00700 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00700 Gene

Drugs & Compounds for LINC00700 Gene

No Compound Related Data Available

Transcripts for LINC00700 Gene

mRNA/cDNA for LINC00700 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Unigene Clusters for LINC00700 Gene

Long intergenic non-protein coding RNA 700:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00700 Gene

No ASD Table

Relevant External Links for LINC00700 Gene

GeneLoc Exon Structure for
LINC00700
ECgene alternative splicing isoforms for
LINC00700

Expression for LINC00700 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00700 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00700 Gene

This gene is overexpressed in Testis (x52.0).

NURSA nuclear receptor signaling pathways regulating expression of LINC00700 Gene:

LINC00700

SOURCE GeneReport for Unigene cluster for LINC00700 Gene:

Hs.576810
genes like me logo Genes that share expression patterns with LINC00700: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00700 Gene

Orthologs for LINC00700 Gene

Evolution for LINC00700 Gene

ENSEMBL:
Gene Tree for LINC00700 (if available)
TreeFam:
Gene Tree for LINC00700 (if available)

No data available for Orthologs for LINC00700 Gene

Paralogs for LINC00700 Gene

No data available for Paralogs for LINC00700 Gene

Variants for LINC00700 Gene

Sequence variations from dbSNP and Humsavar for LINC00700 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000029377 -- 2,012,431(-) G/C intron_variant
rs1000062653 -- 2,013,951(-) C/G intron_variant
rs1000160371 -- 2,014,134(-) C/T splice_donor_variant
rs1000178948 -- 2,010,276(-) C/G intron_variant
rs1000274050 -- 2,009,033(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00700 Gene

Variant ID Type Subtype PubMed ID
nsv1041651 CNV gain 25217958
nsv1046041 CNV gain 25217958
nsv831766 CNV gain 17160897

Additional Variant Information for LINC00700 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00700

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00700 Gene

Disorders for LINC00700 Gene

Additional Disease Information for LINC00700

No disorders were found for LINC00700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00700 Gene

Publications for LINC00700 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00700 Gene

Sources for LINC00700 Gene

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