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Aliases for LINC00686 Gene

Subcategory (RNA class) for LINC00686 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00686 Gene

  • Long Intergenic Non-Protein Coding RNA 686 2 3 5
  • Chromosome 20 Open Reading Frame 90 2
  • C20orf90 3

External Ids for LINC00686 Gene

Previous HGNC Symbols for LINC00686 Gene

  • C20orf90

Previous GeneCards Identifiers for LINC00686 Gene

  • GC20M061327

Summaries for LINC00686 Gene

GeneCards Summary for LINC00686 Gene

LINC00686 (Long Intergenic Non-Protein Coding RNA 686) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00686 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00686 Gene

Genomics for LINC00686 Gene

GeneHancer (GH) Regulatory Elements for LINC00686 Gene

Promoters and enhancers for LINC00686 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I062738 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -40.2 -40204 4.9 ATF1 PKNOX1 SIN3A IRF4 ZNF766 GLIS2 ELK1 ZNF143 ATF7 FOS OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR1-1 MIR1-1HG-AS1 MIR1-1HG ENSG00000232121 ENSG00000229882
GH20I062668 Enhancer 1.1 ENCODE dbSUPER 12.4 +31.8 31796 0.2 MLX ARID4B SIN3A GLIS2 ARID2 ZNF143 ZHX2 MIER2 REST KAT8 SLCO4A1-AS1 LINC00686 NTSR1 ENSG00000223669 GC20P062822 SLCO4A1
GH20I062666 Enhancer 1.1 ENCODE dbSUPER 12.4 +33.2 33202 2.3 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 SP5 NFYC MXD4 SLCO4A1-AS1 LINC00686 NTSR1 ENSG00000223669 GC20P062822 SLCO4A1
GH20I062785 Enhancer 0.5 ENCODE dbSUPER 11.3 -85.8 -85827 1 ZFHX2 NTSR1 LINC00686 MRGBP LOC105372716 LINC00659
GH20I062760 Enhancer 0.2 ENCODE 11.9 -60.4 -60370 0.6 NTSR1 LINC00686 ENSG00000223669 GC20M062750 GC20P062821
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00686 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00686 Gene

Genomic Locations for LINC00686 Gene
5,457 bases
Minus strand

Genomic View for LINC00686 Gene

Genes around LINC00686 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00686 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00686 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC00686 Gene

Proteins for LINC00686 Gene

Post-translational modifications for LINC00686 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00686 Gene

Domains & Families for LINC00686 Gene

Suggested Antigen Peptide Sequences for LINC00686 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LINC00686 Gene

Function for LINC00686 Gene

Phenotypes for LINC00686 Gene

GenomeRNAi human phenotypes for LINC00686:
genes like me logo Genes that share phenotypes with LINC00686: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00686 Gene

Localization for LINC00686 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00686 Gene

Pathways & Interactions for LINC00686 Gene

SuperPathways for LINC00686 Gene

No Data Available

Interacting Proteins for LINC00686 Gene

Gene Ontology (GO) - Biological Process for LINC00686 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00686 Gene

Drugs & Compounds for LINC00686 Gene

No Compound Related Data Available

Transcripts for LINC00686 Gene

mRNA/cDNA for LINC00686 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00686 Gene

No ASD Table

Relevant External Links for LINC00686 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00686 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00686 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00686 Gene:

genes like me logo Genes that share expression patterns with LINC00686: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00686 Gene

Orthologs for LINC00686 Gene

Evolution for LINC00686 Gene

Gene Tree for LINC00686 (if available)
Gene Tree for LINC00686 (if available)

No data available for Orthologs for LINC00686 Gene

Paralogs for LINC00686 Gene

No data available for Paralogs for LINC00686 Gene

Variants for LINC00686 Gene

Additional Variant Information for LINC00686 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00686 Gene

Disorders for LINC00686 Gene

No disorders were found for LINC00686 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC00686 Gene

Publications for LINC00686 Gene

No publications were found for LINC00686 Gene.

Products for LINC00686 Gene

Sources for LINC00686 Gene

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