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Aliases for LINC00683 Gene
Subcategory (RNA class) for LINC00683 Gene
lncRNA
Aliases for LINC00683 Gene
External Ids for LINC00683 Gene
- HGNC: 44467
- NCBI Entrez Gene: 400660
- Ensembl: ENSG00000266256
Previous GeneCards Identifiers for LINC00683 Gene
- GC18P074329
- GC18P076615
Summaries for LINC00683 Gene
GeneCards Summary for LINC00683 Gene
LINC00683 (Long Intergenic Non-Protein Coding RNA 683) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC00683 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00683 Gene
Genomics for LINC00683 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00683 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00683 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00683 Gene
Latest Assembly
- chr18:76,528,652-76,670,111
- (GRCh38/hg38)
- Size:
- 141,460 bases
- Orientation:
- Plus strand
Previous Assembly
- chr18:74,331,734-74,335,516
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 3,783 bases
- Orientation:
- Plus strand
Genomic View for LINC00683 Gene
Genes around LINC00683 on UCSC Golden Path with GeneCards custom track
LINC00683 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 18q23 by HGNC
- 18q23 by Entrez Gene
- 18q23 by Ensembl
LINC00683 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00683 Gene
Proteins for LINC00683 Gene
Post-translational modifications for LINC00683 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00683 Gene
Domains & Families for LINC00683 Gene
Gene Families for LINC00683 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00683 Gene
Function for LINC00683 Gene
Phenotypes From GWAS Catalog for LINC00683 Gene
Phenotypes for LINC00683 Gene
- GenomeRNAi human phenotypes for LINC00683:
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00683 Gene
Localization for LINC00683 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00683 Gene
Transcripts for LINC00683 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00683 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00003481EE_9606 | lncRNA | 2223 | 5 |
RefSeq: NR_120419, Ensembl: ENST00000578803 (view in UCSC) , LncBook: HSALNT0253394, LNCipedia: LINC00683:4, NONCODE: NONHSAT059940.2, |
| URS00003F44A4_9606 | lncRNA | 3510 | 4 |
Ensembl: ENST00000579781 (view in UCSC) , LncBook: HSALNT0253380, LNCipedia: LINC00683:2, NONCODE: NONHSAT059938.2, |
| URS00007DFBD5_9606 | lncRNA | 479 | 4 |
Ensembl: ENST00000582452 (view in UCSC) , LncBook: HSALNT0253365, LNCipedia: LINC00908:10, NONCODE: NONHSAT178051.1, |
| URS00007DB333_9606 | lncRNA | 372 | 4 |
Ensembl: ENST00000584910 (view in UCSC) , LncBook: HSALNT0253363, LNCipedia: LINC00908:9, NONCODE: NONHSAT178050.1, |
| URS00007C005A_9606 | lncRNA | 789 | 3 |
Ensembl: ENST00000584120 (view in UCSC) , LNCipedia: LINC00908:12, NONCODE: NONHSAT059935.2, |
LINC00683 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00683 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC00683 Gene
- GeneLoc Exon Structure for
- LINC00683
Expression for LINC00683 Gene
mRNA differential expression in normal tissues according to GTEx for LINC00683 Gene
This gene is overexpressed in Testis (x6.9) and Pituitary (x6.1).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00683
SOURCE GeneReport for Unigene cluster for LINC00683 Gene:
Hs.131718Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00683 Gene
Orthologs for LINC00683 Gene
No data available for Orthologs for LINC00683 Gene
Paralogs for LINC00683 Gene
No data available for Paralogs for LINC00683 Gene
Variants for LINC00683 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2717388 | CNV | deletion | 23290073 |
| nsv1063632 | CNV | gain | 25217958 |
| nsv833697 | CNV | loss | 17160897 |
Additional Variant Information for LINC00683 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC00683
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00683 Gene
Disorders for LINC00683 Gene
Additional Disease Information for LINC00683
No disorders were found for LINC00683 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00683 Gene
Publications for LINC00683 Gene
- Downregulation of long noncoding RNA LINC00683 associated with unfavorable prognosis in prostate cancer based on TCGA. (PMID: 30963639) Liu Y … Li Q (Journal of cellular biochemistry 2019) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LINC00683 Gene
Products for LINC00683 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00683
- Origene Custom Protein Services for LINC00683
- Browse OriGene Inhibitory RNA Products For LINC00683
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00683
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00683
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00683
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00683
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00683
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00683
Sources for LINC00683 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB