Aliases for LINC00683 Gene

Data sources for LINC00683 Gene:

Subcategory (RNA class) for LINC00683 Gene

lncRNA

Aliases for LINC00683 Gene

External Ids for LINC00683 Gene

Previous GeneCards Identifiers for LINC00683 Gene

  • GC18P074329
  • GC18P076615

Summaries for LINC00683 Gene

GeneCards Summary for LINC00683 Gene

LINC00683 (Long Intergenic Non-Protein Coding RNA 683) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00683 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00683 Gene

Genomics for LINC00683 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00683 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076527 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.2 150 2.2 CEBPA FOXA2 SMAD4 ZNF341 RXRA ETV4 EBF1 GABPB1 RARA DMAP1 LINC00683 LINC00908 ZNF516 HSALNG0122570 ZNF236
GH18J076618 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 250.2 +92.2 92167 4.4 CTCF RXRA SMC3 ZBTB33 RAD21 SPI1 POLR2A MYC MAZ JUND piR-33913 LINC00683 ENSG00000286090 LINC01927 LINC00908 ZNF516 ZNF236
GH18J076526 Enhancer 0.3 dbSUPER 250.7 -1.4 -1407 0.6 ZNF146 LINC00683 LINC00908 HSALNG0122570 ZNF516 HSALNG0122569 ZNF236
GH18J076530 Enhancer 0.2 dbSUPER 250.7 +1.8 1779 0.4 LINC00683 LINC00908 HSALNG0122570 ZNF516 ZNF236
GH18J076524 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.7 -3.1 -3135 1.3 FOXA2 FOXA1 ZBTB48 CBX2 RFX1 SP7 KDM1A ARID3A PRDM10 CBX8 LINC00683 LINC00908 HSALNG0122570 HSALNG0122569 ZNF516 ZNF236
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00683 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00683 Gene

Latest Assembly
chr18:76,528,652-76,670,111
(GRCh38/hg38)
Size:
141,460 bases
Orientation:
Plus strand

Previous Assembly
chr18:74,331,734-74,335,516
(GRCh37/hg19 by Entrez Gene)
Size:
3,783 bases
Orientation:
Plus strand

Genomic View for LINC00683 Gene

Genes around LINC00683 on UCSC Golden Path with GeneCards custom track
LINC00683 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00683 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00683 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00683 Gene

Proteins for LINC00683 Gene

Post-translational modifications for LINC00683 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00683 Gene

Domains & Families for LINC00683 Gene

Gene Families for LINC00683 Gene

genes like me logo Genes that share domains with LINC00683: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00683 Gene

Function for LINC00683 Gene

Phenotypes From GWAS Catalog for LINC00683 Gene

Phenotypes for LINC00683 Gene

genes like me logo Genes that share phenotypes with LINC00683: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00683 Gene

Localization for LINC00683 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00683 Gene

Pathways & Interactions for LINC00683 Gene

PathCards logo

SuperPathways for LINC00683 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00683 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00683 Gene

Drugs & Compounds for LINC00683 Gene

No Compound Related Data Available

Transcripts for LINC00683 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00683 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003481EE_9606 lncRNA 2223 5

RefSeq: NR_120419,

Ensembl: ENST00000578803 (view in UCSC) ,

LncBook: HSALNT0253394,

LNCipedia: LINC00683:4,

NONCODE: NONHSAT059940.2,

URS00003F44A4_9606 lncRNA 3510 4

Ensembl: ENST00000579781 (view in UCSC) ,

LncBook: HSALNT0253380,

LNCipedia: LINC00683:2,

NONCODE: NONHSAT059938.2,

URS00007DFBD5_9606 lncRNA 479 4

Ensembl: ENST00000582452 (view in UCSC) ,

LncBook: HSALNT0253365,

LNCipedia: LINC00908:10,

NONCODE: NONHSAT178051.1,

URS00007DB333_9606 lncRNA 372 4

Ensembl: ENST00000584910 (view in UCSC) ,

LncBook: HSALNT0253363,

LNCipedia: LINC00908:9,

NONCODE: NONHSAT178050.1,

URS00007C005A_9606 lncRNA 789 3

Ensembl: ENST00000584120 (view in UCSC) ,

LNCipedia: LINC00908:12,

NONCODE: NONHSAT059935.2,

LINC00683 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00683 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00683 Gene

No ASD Table

Relevant External Links for LINC00683 Gene

GeneLoc Exon Structure for
LINC00683

Expression for LINC00683 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00683 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00683 Gene

This gene is overexpressed in Testis (x6.9) and Pituitary (x6.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00683

SOURCE GeneReport for Unigene cluster for LINC00683 Gene:

Hs.131718
genes like me logo Genes that share expression patterns with LINC00683: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00683 Gene

Orthologs for LINC00683 Gene

Evolution for LINC00683 Gene

ENSEMBL:
Gene Tree for LINC00683 (if available)
TreeFam:
Gene Tree for LINC00683 (if available)

No data available for Orthologs for LINC00683 Gene

Paralogs for LINC00683 Gene

No data available for Paralogs for LINC00683 Gene

Variants for LINC00683 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00683 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00683 Gene

Variant ID Type Subtype PubMed ID
esv2717388 CNV deletion 23290073
nsv1063632 CNV gain 25217958
nsv833697 CNV loss 17160897

Additional Variant Information for LINC00683 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00683

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00683 Gene

Disorders for LINC00683 Gene

Additional Disease Information for LINC00683

No disorders were found for LINC00683 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00683 Gene

Publications for LINC00683 Gene

  1. Downregulation of long noncoding RNA LINC00683 associated with unfavorable prognosis in prostate cancer based on TCGA. (PMID: 30963639) Liu Y … Li Q (Journal of cellular biochemistry 2019) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC00683 Gene

Products for LINC00683 Gene

Sources for LINC00683 Gene