Aliases for LINC00681 Gene

Data sources for LINC00681 Gene:

RNA type for LINC00681 Gene

lncRNA

Aliases for LINC00681 Gene

External Ids for LINC00681 Gene

Previous GeneCards Identifiers for LINC00681 Gene

  • GC08P012652

Summaries for LINC00681 Gene

GeneCards Summary for LINC00681 Gene

LINC00681 (Long Intergenic Non-Protein Coding RNA 681) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00681 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00681 Gene

Genomics for LINC00681 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00681 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00681 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00681 Gene

Latest Assembly
chr8:12,791,450-12,819,243
(GRCh38/hg38)
Size:
27,794 bases
Orientation:
Plus strand

Previous Assembly
chr8:12,651,749-12,675,800
(GRCh37/hg19 by Entrez Gene)
Size:
24,052 bases
Orientation:
Plus strand

chr8:12,651,752-12,675,800
(GRCh37/hg19 by Ensembl)
Size:
24,049 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):5,989,607-6,013,667 (+)

Genomic View for LINC00681 Gene

Genes around LINC00681 on UCSC Golden Path with GeneCards custom track
LINC00681 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00681 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00681 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00681 Gene

Proteins for LINC00681 Gene

Post-translational modifications for LINC00681 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00681 Gene

Domains & Families for LINC00681 Gene

Gene Families for LINC00681 Gene

genes like me logo Genes that share domains with LINC00681: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00681 Gene

Function for LINC00681 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00681 Gene

Localization for LINC00681 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00681 Gene

Pathways & Interactions for LINC00681 Gene

PathCards logo

SuperPathways for LINC00681 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00681 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00681 Gene

Drugs & Compounds for LINC00681 Gene

No Compound Related Data Available

Transcripts for LINC00681 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00681 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00006001B4_9606 lncRNA 504 3

Ensembl: ENST00000530150 (view in UCSC) ,

LNCipedia: LINC00681:1,

NONCODE: NONHSAT125183.2,

URS0000ABD8C2_9606 lncRNA 507 1

RefSeq: NR_102423,

URS00009AFDD7_9606 lncRNA 504 2

LncBook: HSALNT0133267,

NONCODE: NONHSAT215442.1,

URS0001BF8E5C_9606 lncRNA 1727 1

LncBook: HSALNT0133265,

URS0001BF3CBE_9606 lncRNA 1548 1

LncBook: HSALNT0133264,

LINC00681 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00681 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00681 Gene

No ASD Table

Relevant External Links for LINC00681 Gene

GeneLoc Exon Structure for
LINC00681

Expression for LINC00681 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00681 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00681 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x30.1) and Skin - Not Sun Exposed (Suprapubic) (x16.3).
genes like me logo Genes that share expression patterns with LINC00681: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00681 Gene

Orthologs for LINC00681 Gene

Evolution for LINC00681 Gene

ENSEMBL:
Gene Tree for LINC00681 (if available)
TreeFam:
Gene Tree for LINC00681 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00681

No data available for Orthologs for LINC00681 Gene

Paralogs for LINC00681 Gene

No data available for Paralogs for LINC00681 Gene

Variants for LINC00681 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00681 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00681 Gene

Variant ID Type Subtype PubMed ID
dgv2040e212 CNV loss 25503493
dgv7083n100 CNV loss 25217958
esv32567 CNV loss 17666407
nsv1161731 CNV deletion 26073780
nsv442436 CNV loss 18776908

Additional Variant Information for LINC00681 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00681
Leiden Open Variation Database (LOVD)
LINC00681

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00681 Gene

Disorders for LINC00681 Gene

Additional Disease Information for LINC00681

No disorders were found for LINC00681 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00681 Gene

Publications for LINC00681 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for LINC00681 Gene

Sources for LINC00681 Gene