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Aliases for LINC00680 Gene
Data sources for LINC00680 Gene:
RNA type for LINC00680 Gene
lncRNA
Aliases for LINC00680 Gene
External Ids for LINC00680 Gene
- HGNC: 44417
- NCBI Entrez Gene: 106660612
- Ensembl: ENSG00000215190
Previous GeneCards Identifiers for LINC00680 Gene
- GC06M058273
- GC06M058275
Summaries for LINC00680 Gene
GeneCards Summary for LINC00680 Gene
LINC00680 (Long Intergenic Non-Protein Coding RNA 680) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00680 include Sarcoma.
Additional gene information for LINC00680 Gene
- Alliance of Genome Resources
- Search for LINC00680 at DataMed
- Search for LINC00680 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00680 Gene
Genomics for LINC00680 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC00680 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC00680 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC00680 Gene
Latest Assembly
- chr6:57,945,834-57,961,501
- (GRCh38/hg38)
- Size:
- 15,668 bases
- Orientation:
- Minus strand
Previous Assembly
- chr6:58,272,112-58,287,724
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 15,613 bases
- Orientation:
- Minus strand
Genomic View for LINC00680 Gene
Genes around LINC00680 on UCSC Golden Path with GeneCards custom track
LINC00680 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 6p11.2 by HGNC
- 6p11.2 by Entrez Gene
- 6p11.2 by Ensembl
LINC00680 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC00680 Gene
Proteins for LINC00680 Gene
Post-translational modifications for LINC00680 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC00680 Gene
Domains & Families for LINC00680 Gene
Gene Families for LINC00680 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00680 Gene
Function for LINC00680 Gene
Phenotypes From GWAS Catalog for LINC00680 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00680 Gene
Localization for LINC00680 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00680 Gene
Transcripts for LINC00680 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00680 Gene
| RNAcentral Transcript ID | RNA Type | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00008E39AB_9606 | lncRNA | 2477 | 1 |
RefSeq: NR_132994, |
| URS00008E3957_9606 | lncRNA | 1976 | 1 |
RefSeq: NR_125727, |
| URS00008E3A4B_9606 | lncRNA | 1931 | 1 |
RefSeq: NR_132995, |
| URS00008E39F8_9606 | lncRNA | 1803 | 1 |
RefSeq: NR_125728, |
| URS00008E3A06_9606 | lncRNA | 1778 | 1 |
RefSeq: NR_125729, |
LINC00680 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC00680 Gene
- 11 NCBI additional mRNA sequence :
- 6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000399751 1621 nts (view in UCSC)
- ENST00000418368 1666 nts (view in UCSC)
- ENST00000418765 1088 nts (view in UCSC)
- ENST00000422882 2622 nts (view in UCSC)
- ENST00000450081 1593 nts (view in UCSC)
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC00680 Gene
- GeneLoc Exon Structure for
- LINC00680
Expression for LINC00680 Gene
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00680 Gene
Orthologs for LINC00680 Gene
Evolution for LINC00680 Gene
- ENSEMBL:
- Gene Tree for LINC00680 (if available)
- TreeFam:
- Gene Tree for LINC00680 (if available)
- Alliance of Genome Resources:
- Additional Orthologs for LINC00680
No data available for Orthologs for LINC00680 Gene
Paralogs for LINC00680 Gene
No data available for Paralogs for LINC00680 Gene
Variants for LINC00680 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC00680 Gene
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00680 Gene
Disorders for LINC00680 Gene
Search LINC00680 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC00680
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00680 Gene
Publications for LINC00680 Gene
- CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3
- Prediction of clinical outcome and survival in soft-tissue sarcoma using a ten-lncRNA signature. (PMID: 29113307) He RQ … Chen G (Oncotarget 2017) 72
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC00680 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC00680
- Origene Custom Protein Services for LINC00680
- Browse OriGene Inhibitory RNA Products For LINC00680
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC00680
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC00680
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC00680
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC00680
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC00680
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC00680
Sources for LINC00680 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Apr-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) ASD
- (27) SAGE
- (28) SOURCE
- (29) HomoloGene
- (30) PanEnsembl
- (31) euGenes
- (32) SGD
- (33) FlyBase
- (34) WormBase
- (35) Pseudogene
- (36) DGV
- (37) dbSNP
- (38) GenAtlas
- (39) HGMD
- (40) GAD
- (41) BGMUT
- (42) HuGE
- (43) Atlas
- (44) GenBank
- (45) HORDE
- (46) HUGE
- (47) IMGT
- (48) Leiden
- (49) miRBase
- (50) DME
- (51) OriGene
- (52) PubMed
- (53) R&D Systems
- (54) Tocris
- (55) Abcam
- (56) Novus Biologicals
- (57) ProSpec
- (58) Sino Biological
- (59) GenScript
- (60) Qiagen
- (61) OCA
- (62) Proteopedia
- (63) MOPED
- (64) neXtProt
- (65) Reactome
- (66) GeneGo (Thomson Reuters)
- (67) DISEASES
- (68) SIMAP
- (69) GenomeRNAi
- (70) LifeMap
- (71) miRTarBase
- (72) MalaCards
- (73) Invitrogen
- (74) BitterDB
- (75) ESI-BIO
- (76) RefSeq
- (77) BioSystems
- (78) MaxQB
- (79) IUPHAR
- (80) BioGPS
- (81) Illumina
- (82) COMPARTMENTS
- (83) HOMER
- (84) PaxDb
- (85) ApexBio
- (86) Addgene
- (87) antibodies-online
- (88) CYP
- (89) NONCODE
- (90) TreeFam
- (91) PathCards
- (92) GeneReviews
- (93) GeneTex
- (94) Taconic Biosciences
- (95) GTEx
- (96) ProteomicsDB
- (97) SCBT
- (98) DGIdb
- (99) ClinicalTrials
- (100) RVIS
- (101) SIGNOR
- (102) diseasecard
- (103) NIH Rare Diseases
- (104) Orphanet
- (105) UMLS
- (106) GTR
- (107) Disease Ontology
- (108) MedlinePlus Genetics
- (109) MeSH
- (110) MedlinePlus
- (111) CDC
- (112) NINDS
- (113) NCBI Bookshelf
- (114) ClinVar
- (115) Gene Damage Index
- (116) HPO
- (117) UDN
- (118) VISTA
- (119) FANTOM5
- (120) ENCODE
- (121) ProSci
- (122) Horizon
- (123) The Signaling Pathways Project (SPP)
- (124) IID
- (125) VectorBuilder
- (126) SNPedia
- (127) BRCA Exchange
- (128) CIViC
- (129) ProteoGenix
- (130) dbSUPER
- (131) TISSUES
- (132) Gene ORGANizer
- (133) abm
- (134) Human Protein Atlas
- (135) GWAS Catalog
- (136) Monarch Initiative
- (137) DataMed
- (138) HumanCyc
- (139) UCNEbase
- (140) EPDnew
- (141) Applied Biosystems
- (142) GlyConnect
- (143) Aminode
- (144) GeneCopoeia
- (145) GPS-Prot
- (146) RNAcentral
- (147) LncRNADisease
- (148) LOVD
- (149) miR2Disease
- (150) DiseaseEnhancer
- (151) Boster Bio
- (152) Biorbyt
- (153) Biocompare
- (154) Mastermind
- (155) CTD^2 Dashboard
- (156) CraniofacialAtlas
- (157) GeneImprint
- (158) Synthego
- (159) ENA
- (160) GtRNAdb
- (161) LncBase
- (162) LncBook
- (163) LNCipedia
- (164) Modomics
- (165) PDBe
- (166) Rfam
- (167) SILVA
- (168) snOPY
- (169) SRPDB
- (170) GENCODE
- (171) TarBase
- (172) Open Targets Platform
- (173) 5SRRNADB
- (174) snoDB
- (175) MirGeneDB
- (176) Alliance of Genome Resources