LINC00680 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 680

GC06M057945
GIFtS:
11
See more...

Aliases for LINC00680 Gene

Subcategory (RNA class) for LINC00680 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LINC00680 Gene

  • Long Intergenic Non-Protein Coding RNA 680 2 3 5
  • LINC00680 2 5
  • HSALNG0141620 164

External Ids for LINC00680 Gene

Previous GeneCards Identifiers for LINC00680 Gene

  • GC06M058273
  • GC06M058275

Summaries for LINC00680 Gene

GeneCards Summary for LINC00680 Gene

LINC00680 (Long Intergenic Non-Protein Coding RNA 680) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00680 include Sarcoma.

Additional gene information for LINC00680 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00680 Gene

Genomics for LINC00680 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC00680 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00680 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00680 Gene

Genomic Locations for LINC00680 Gene
chr6:57,945,834-57,961,501
(GRCh38/hg38)
Size:
15,668 bases
Orientation:
Minus strand
chr6:58,272,352-58,287,779
(GRCh37/hg19)
Size:
15,428 bases
Orientation:
Minus strand

Genomic View for LINC00680 Gene

Genes around LINC00680 on UCSC Golden Path with GeneCards custom track
LINC00680 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00680 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00680 Gene

Proteins for LINC00680 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC00680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00680 Gene

Domains & Families for LINC00680 Gene

Gene Families for LINC00680 Gene

HGNC:
genes like me logo Genes that share domains with LINC00680: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00680 Gene

Function for LINC00680 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00680 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00680 Gene

Localization for LINC00680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00680 Gene

Pathways & Interactions for LINC00680 Gene

PathCards logo

SuperPathways for LINC00680 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00680 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00680 Gene

Drugs & Compounds for LINC00680 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00680 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00680 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008E3957_9606 lncRNA 1956 2

HGNC: 44417,

RefSeq: NR_125727,

URS00008E39AB_9606 lncRNA 2457 1

RefSeq: NR_132994,

URS00008E3A4B_9606 lncRNA 1907 1

RefSeq: NR_132995,

URS00008E39F8_9606 lncRNA 1803 1

RefSeq: NR_125728,

URS00008E3A06_9606 lncRNA 1754 1

RefSeq: NR_125729,

LINC00680 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00680 Gene

11 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00680 Gene

No ASD Table

Relevant External Links for LINC00680 Gene

GeneLoc Exon Structure for
LINC00680

Expression for LINC00680 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00680 Gene

mRNA expression in normal human tissues for LINC00680 Gene
mRNA expression by GTEx for LINC00680 Gene
genes like me logo Genes that share expression patterns with LINC00680: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00680 Gene

Orthologs for LINC00680 Gene

Evolution for LINC00680 Gene

ENSEMBL:
Gene Tree for LINC00680 (if available)
TreeFam:
Gene Tree for LINC00680 (if available)

No data available for Orthologs for LINC00680 Gene

Paralogs for LINC00680 Gene

No data available for Paralogs for LINC00680 Gene

Variants for LINC00680 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC00680 Gene

Additional Variant Information for LINC00680 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00680 Gene

Disorders for LINC00680 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00680 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
sarcoma
  • connective and soft tissue neoplasm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00680

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with LINC00680: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00680 Gene

Publications for LINC00680 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC00680 gene in Mastermind

Products for LINC00680 Gene

Sources for LINC00680 Gene