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Aliases for LINC00678 Gene

Subcategory (RNA class) for LINC00678 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00678 Gene

  • Long Intergenic Non-Protein Coding RNA 678 2 3 5

External Ids for LINC00678 Gene

Summaries for LINC00678 Gene

GeneCards Summary for LINC00678 Gene

LINC00678 (Long Intergenic Non-Protein Coding RNA 678) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00678 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00678 Gene

Genomics for LINC00678 Gene

GeneHancer (GH) Regulatory Elements for LINC00678 Gene

Promoters and enhancers for LINC00678 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J027627 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +2.6 2640 10.8 SP1 POLR2A LIN7C LINC00678 GC11P027613 GC11P027592 BDNF-AS
GH11J027637 Enhancer 0.4 Ensembl dbSUPER 0.7 -3.5 -3474 0.6 LIN7C LINC00678 GC11P027592 GC11P027695 BDNF-AS
GH11J027613 Enhancer 0.7 Ensembl ENCODE 0.3 +21.0 21013 1.1 CREB1 ATF7 POLR2A ATF2 GC11P027613 LIN7C GC11P027592 LINC00678 BDNF-AS
GH11J027665 Promoter 0.8 Ensembl 0.3 -30.9 -30874 0.2 FOXK2 ELF1 FOXA1 KLF1 GC11P027695 LINC00678 BDNF BDNF-AS
GH11J027672 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.3 -38.8 -38806 2.5 CEBPB RCOR1 LIN7C BDNF GC11P027695 LINC00678 BDNF-AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00678 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00678 Gene

Genomic Locations for LINC00678 Gene
chr11:27,617,626-27,634,627
(GRCh38/hg38)
Size:
17,002 bases
Orientation:
Minus strand
chr11:27,639,173-27,656,174
(GRCh37/hg19)
Size:
17,002 bases
Orientation:
Minus strand

Genomic View for LINC00678 Gene

Genes around LINC00678 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00678 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00678 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00678 Gene

Proteins for LINC00678 Gene

Post-translational modifications for LINC00678 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00678 Gene

Domains & Families for LINC00678 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00678 Gene

Function for LINC00678 Gene

Phenotypes From GWAS Catalog for LINC00678 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00678 Gene

Localization for LINC00678 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00678 Gene

Pathways & Interactions for LINC00678 Gene

PathCards logo

SuperPathways for LINC00678 Gene

No Data Available

Interacting Proteins for LINC00678 Gene

Gene Ontology (GO) - Biological Process for LINC00678 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00678 Gene

Drugs & Compounds for LINC00678 Gene

No Compound Related Data Available

Transcripts for LINC00678 Gene

mRNA/cDNA for LINC00678 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00678 Gene

No ASD Table

Relevant External Links for LINC00678 Gene

GeneLoc Exon Structure for
LINC00678
ECgene alternative splicing isoforms for
LINC00678

Expression for LINC00678 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00678 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00678 Gene:

LINC00678
genes like me logo Genes that share expression patterns with LINC00678: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00678 Gene

Orthologs for LINC00678 Gene

Evolution for LINC00678 Gene

ENSEMBL:
Gene Tree for LINC00678 (if available)
TreeFam:
Gene Tree for LINC00678 (if available)

No data available for Orthologs for LINC00678 Gene

Paralogs for LINC00678 Gene

No data available for Paralogs for LINC00678 Gene

Variants for LINC00678 Gene

Sequence variations from dbSNP and Humsavar for LINC00678 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000008594 -- 27,623,536(-) C/T intron_variant
rs1000216822 -- 27,629,776(-) C/T intron_variant
rs1000422530 -- 27,623,874(-) T/C intron_variant
rs1000523485 -- 27,628,212(-) T/C intron_variant
rs1000588628 -- 27,629,527(-) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00678 Gene

Variant ID Type Subtype PubMed ID
nsv832095 CNV gain 17160897

Additional Variant Information for LINC00678 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00678

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00678 Gene

Disorders for LINC00678 Gene

Additional Disease Information for LINC00678

No disorders were found for LINC00678 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00678 Gene

Publications for LINC00678 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for LINC00678 Gene

Sources for LINC00678 Gene

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