Aliases for LINC00672 Gene

Subcategory (RNA class) for LINC00672 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00672 Gene

  • Long Intergenic Non-Protein Coding RNA 672 2 3 5 13
  • HSALNG0116205 167
  • NONHSAG021679 92
  • Lnc-LASP1-5 168
  • LINC00672 2

External Ids for LINC00672 Gene

Previous GeneCards Identifiers for LINC00672 Gene

  • GC17P037082

Summaries for LINC00672 Gene

GeneCards Summary for LINC00672 Gene

LINC00672 (Long Intergenic Non-Protein Coding RNA 672) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00672 include Endometrial Cancer.

Additional gene information for LINC00672 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00672 Gene

Genomics for LINC00672 Gene

GeneHancer (GH) Regulatory Elements for LINC00672 Gene

Promoters and enhancers for LINC00672 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J038925 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.7 702 1.6 CTBP1 NFYB POLR2A NFIC CEBPG YY1 FOSL1 NR2F1 FOXM1 VEZF1 LINC00672 ENSG00000266588 FBXO47 C17orf98 PIP4K2B CWC25 piR-56759-246
GH17J038926 Enhancer 1 ENCODE dbSUPER 500.7 +1.7 1676 0.2 AFF1 HES1 RUNX1 CTBP1 HDAC3 NCOR1 NFIC CEBPG PBX2 FOSL1 LINC00672 FBXO47 C17orf98 PIP4K2B CWC25 piR-56759-246
GH17J038923 Enhancer 0.7 ENCODE 500.7 -1.1 -1064 0.2 CTCF USF1 MYC SMC3 CEBPB RAD21 SAP130 MAX E2F6 MNT LINC00672 FBXO47 C17orf98 PIP4K2B CWC25 ENSG00000265784
GH17J038895 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 6.3 -25.8 -25750 7.7 ZBTB40 NRF1 TCF12 POLR2G SP1 FOS ZIC2 AFF1 TARDBP RFX1 LASP1 ENSG00000244086 RPL23 SNORA21 SNORA21B MED1 CWC25 LINC00672 ENSG00000266588 ENSG00000263466
GH17J039056 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 5.4 +132.1 132115 1.8 NRF1 POLR2G ZBTB10 ZBTB26 KLF7 MYC TGIF2 CTBP1 POLR2A MXI1 RDM1P5 lnc-LINC00672-5 PLXDC1 ARL5C LINC00672 lnc-ARL5C-9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00672 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00672 Gene

Genomic Locations for LINC00672 Gene
chr17:38,925,167-38,929,384
(GRCh38/hg38)
Size:
4,218 bases
Orientation:
Plus strand
chr17:37,081,421-37,085,637
(GRCh37/hg19)
Size:
4,217 bases
Orientation:
Plus strand

Genomic View for LINC00672 Gene

Genes around LINC00672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00672 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00672 Gene

Proteins for LINC00672 Gene

  • Protein details for LINC00672 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWH6-A0A1B0GWH6_HUMAN
    Recommended name:
    Long intergenic non-protein coding RNA 672
    Protein Accession:
    A0A1B0GWH6

    Protein attributes for LINC00672 Gene

    Size:
    25 amino acids
    Molecular mass:
    2949 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00672 Gene

Post-translational modifications for LINC00672 Gene

No Post-translational modifications

Other Protein References for LINC00672 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LINC00672 Gene

Domains & Families for LINC00672 Gene

Gene Families for LINC00672 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for LINC00672 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00672: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00672 Gene

Function for LINC00672 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00672 Gene

Localization for LINC00672 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00672 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for LINC00672 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LINC00672: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for LINC00672 Gene

Pathways & Interactions for LINC00672 Gene

PathCards logo

SuperPathways for LINC00672 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00672 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00672 Gene

Drugs & Compounds for LINC00672 Gene

No Compound Related Data Available

Transcripts for LINC00672 Gene

mRNA/cDNA for LINC00672 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00672 Gene

No ASD Table

Relevant External Links for LINC00672 Gene

GeneLoc Exon Structure for
LINC00672

Expression for LINC00672 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00672 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00672 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x4.4) and Brain - Frontal Cortex (BA9) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00672

SOURCE GeneReport for Unigene cluster for LINC00672 Gene:

Hs.634043
genes like me logo Genes that share expression patterns with LINC00672: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00672 Gene

Orthologs for LINC00672 Gene

Evolution for LINC00672 Gene

ENSEMBL:
Gene Tree for LINC00672 (if available)
TreeFam:
Gene Tree for LINC00672 (if available)

No data available for Orthologs for LINC00672 Gene

Paralogs for LINC00672 Gene

No data available for Paralogs for LINC00672 Gene

Variants for LINC00672 Gene

Additional dbSNP identifiers (rs#s) for LINC00672 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00672 Gene

Variant ID Type Subtype PubMed ID
esv2674995 CNV deletion 23128226
esv3640532 CNV loss 21293372
nsv1146669 OTHER inversion 26484159
nsv2045 CNV insertion 18451855

Additional Variant Information for LINC00672 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00672

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00672 Gene

Disorders for LINC00672 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00672 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
endometrial cancer
  • endometrial cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00672

genes like me logo Genes that share disorders with LINC00672: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00672 Gene

Publications for LINC00672 Gene

  1. Long non-coding RNA LINC00672 contributes to p53 protein-mediated gene suppression and promotes endometrial cancer chemosensitivity. (PMID: 28232485) Li W … Zhou Y (The Journal of biological chemistry 2017) 2 3 54
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 13 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00672 Gene

Sources for LINC00672 Gene