Aliases for LINC00670 Gene

Subcategory (RNA class) for LINC00670 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00670 Gene

  • Long Intergenic Non-Protein Coding RNA 670 2 3 5
  • LINC00670 2 168
  • HSALNG0114627 167
  • NONHSAG020850 92

External Ids for LINC00670 Gene

Previous GeneCards Identifiers for LINC00670 Gene

  • GC17P012453

Summaries for LINC00670 Gene

GeneCards Summary for LINC00670 Gene

LINC00670 (Long Intergenic Non-Protein Coding RNA 670) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00670 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00670 Gene

Genomics for LINC00670 Gene

GeneHancer (GH) Regulatory Elements for LINC00670 Gene

Promoters and enhancers for LINC00670 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J012549 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 500.7 +0.1 58 1.6 GLIS1 PKNOX1 LINC00670 MYOCD piR-35672-025 lnc-MYOCD-3
GH17J011908 Enhancer 1.1 Ensembl ENCODE 11.7 -640.7 -640739 1.3 CTCF PHB2 ZBTB11 AFF1 TARDBP HES1 NR3C1 TOE1 MYC RUNX1 MYOCD LINC00670 piR-42491-088 FJ601684-171 DNAH9
GH17J012438 Enhancer 0.9 ENCODE 11.9 -110.7 -110745 0.2 PHB2 ZBTB11 HES1 CTBP1 HINFP NFYB HDAC3 NCOR1 RELA TRIM25 MYOCD LINC00670 piR-39858-261 ENSG00000286617
GH17J012522 Enhancer 0.9 Ensembl ENCODE 0.3 -26.8 -26775 1.3 TCF12 ZIC2 TRIM28 OSR2 WT1 SP2 ZBTB17 FOSL2 NR3C1 ZNF335 LINC00670 lnc-MYOCD-3
GH17J012510 Enhancer 0.6 Ensembl ENCODE 0.3 -38.9 -38864 1.4 TCF12 FOS FOSL2 FOXA1 SP1 lnc-MYOCD-3 LINC00670
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00670 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00670 Gene

Genomic Locations for LINC00670 Gene
chr17:12,549,764-12,642,854
(GRCh38/hg38)
Size:
93,091 bases
Orientation:
Plus strand
chr17:12,453,099-12,546,171
(GRCh37/hg19)
Size:
93,073 bases
Orientation:
Plus strand

Genomic View for LINC00670 Gene

Genes around LINC00670 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00670 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00670 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00670 Gene

Proteins for LINC00670 Gene

Post-translational modifications for LINC00670 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00670 Gene

Domains & Families for LINC00670 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00670 Gene

Function for LINC00670 Gene

Phenotypes From GWAS Catalog for LINC00670 Gene

Phenotypes for LINC00670 Gene

genes like me logo Genes that share phenotypes with LINC00670: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00670 Gene

Localization for LINC00670 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00670 Gene

Pathways & Interactions for LINC00670 Gene

PathCards logo

SuperPathways for LINC00670 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00670 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00670 Gene

Drugs & Compounds for LINC00670 Gene

No Compound Related Data Available

Transcripts for LINC00670 Gene

mRNA/cDNA for LINC00670 Gene

14 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
10 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00670 Gene

No ASD Table

Relevant External Links for LINC00670 Gene

GeneLoc Exon Structure for
LINC00670

Expression for LINC00670 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00670 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00670 Gene

This gene is overexpressed in Artery - Aorta (x13.4), Artery - Coronary (x12.6), and Artery - Tibial (x11.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00670

SOURCE GeneReport for Unigene cluster for LINC00670 Gene:

Hs.376614
genes like me logo Genes that share expression patterns with LINC00670: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00670 Gene

Orthologs for LINC00670 Gene

Evolution for LINC00670 Gene

ENSEMBL:
Gene Tree for LINC00670 (if available)
TreeFam:
Gene Tree for LINC00670 (if available)

No data available for Orthologs for LINC00670 Gene

Paralogs for LINC00670 Gene

No data available for Paralogs for LINC00670 Gene

Variants for LINC00670 Gene

Additional dbSNP identifiers (rs#s) for LINC00670 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00670 Gene

Variant ID Type Subtype PubMed ID
esv3364895 CNV insertion 20981092
esv34095 CNV loss 18971310
esv3639974 CNV loss 21293372

Additional Variant Information for LINC00670 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00670

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00670 Gene

Disorders for LINC00670 Gene

Additional Disease Information for LINC00670

No disorders were found for LINC00670 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00670 Gene

Publications for LINC00670 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00670 Gene

Sources for LINC00670 Gene