Aliases for LINC00667 Gene

Subcategory (RNA class) for LINC00667 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00667 Gene

  • Long Intergenic Non-Protein Coding RNA 667 2 3 5
  • LINC00667 2 170
  • HSALNG0119753 169
  • NONHSAG023258 94

External Ids for LINC00667 Gene

Summaries for LINC00667 Gene

GeneCards Summary for LINC00667 Gene

LINC00667 (Long Intergenic Non-Protein Coding RNA 667) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00667 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LINC00667 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00667 Gene

Genomics for LINC00667 Gene

GeneHancer (GH) Regulatory Elements for LINC00667 Gene

Promoters and enhancers for LINC00667 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J005236 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 67.2 +6.2 6176 4.5 ZNF785 SP1 ZBTB40 LCORL RBPJ POLR2A ATF1 CREB1 HCFC1 ELF1 LINC00526 ENSG00000265091 piR-51821 LINC00667 DLGAP1 AKAIN1 ENSG00000265188 LOC100422274 lnc-AKAIN1-3
GH18J005293 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 23 +63.6 63598 5.8 SP1 ZBTB6 POLR2A NR2F6 ATF1 CREB1 MIXL1 MYC CC2D1A HLF ZBTB14 lnc-ARHGAP28-18 LINC00667 AKAIN1 lnc-AKAIN1-4
GH18J005626 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 +395.7 395670 4.9 ZNF785 ZBTB6 ZNF701 ZNF121 SP7 ZSCAN21 KLF14 ZNF547 GLIS2 PKNOX1 ENSG00000264000 BOD1P2 ENSG00000265316 LINC01892 LINC00667 EPB41L3 lnc-EPB41L3-3
GH18J005287 Enhancer 0.3 Ensembl 25.5 +55.5 55525 1.2 EBF1 LINC00667 lnc-AKAIN1-4 piR-31534-298
GH18J005244 Enhancer 0.2 ENCODE 38.2 +12.6 12581 2 LINC00667 AKAIN1 BOD1P2 ENSG00000265188 lnc-AKAIN1-3 piR-60104-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00667 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00667 Gene

Genomic Locations for LINC00667 Gene
chr18:5,232,876-5,290,608
(GRCh38/hg38)
Size:
57,733 bases
Orientation:
Plus strand
chr18:5,232,875-5,246,507
(GRCh37/hg19)
Size:
13,633 bases
Orientation:
Plus strand

Genomic View for LINC00667 Gene

Genes around LINC00667 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00667 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00667 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00667 Gene

Proteins for LINC00667 Gene

Post-translational modifications for LINC00667 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00667 Gene

Domains & Families for LINC00667 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00667 Gene

Function for LINC00667 Gene

Phenotypes From GWAS Catalog for LINC00667 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00667 Gene

Localization for LINC00667 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00667 Gene

Pathways & Interactions for LINC00667 Gene

PathCards logo

SuperPathways for LINC00667 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00667 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00667 Gene

Drugs & Compounds for LINC00667 Gene

No Compound Related Data Available

Transcripts for LINC00667 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00667 Gene

No ASD Table

Relevant External Links for LINC00667 Gene

GeneLoc Exon Structure for
LINC00667
ECgene alternative splicing isoforms for
LINC00667

Expression for LINC00667 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00667 Gene

Protein differential expression in normal tissues from HIPED for LINC00667 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LINC00667 Gene



Protein tissue co-expression partners for LINC00667 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of LINC00667 Gene:

LINC00667

SOURCE GeneReport for Unigene cluster for LINC00667 Gene:

Hs.643553
genes like me logo Genes that share expression patterns with LINC00667: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00667 Gene

Orthologs for LINC00667 Gene

Evolution for LINC00667 Gene

ENSEMBL:
Gene Tree for LINC00667 (if available)
TreeFam:
Gene Tree for LINC00667 (if available)

No data available for Orthologs for LINC00667 Gene

Paralogs for LINC00667 Gene

No data available for Paralogs for LINC00667 Gene

Variants for LINC00667 Gene

Sequence variations from dbSNP and Humsavar for LINC00667 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000278372 -- 5,237,961(+) G/A upstream_transcript_variant
rs1000303667 -- 5,239,085(+) C/T intron_variant
rs1000373495 -- 5,238,081(+) G/C/T upstream_transcript_variant
rs1000394372 -- 5,238,585(+) C/G non_coding_transcript_variant
rs1000508348 -- 5,241,957(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00667 Gene

Variant ID Type Subtype PubMed ID
dgv184n21 CNV gain 19592680
nsv1060440 CNV gain 25217958
nsv1066095 CNV gain 25217958

Additional Variant Information for LINC00667 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00667

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00667 Gene

Disorders for LINC00667 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00667 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • hht
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00667

genes like me logo Genes that share disorders with LINC00667: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00667 Gene

Publications for LINC00667 Gene

  1. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 2 3 56
  2. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 2 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00667 Gene

Sources for LINC00667 Gene