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Aliases for LINC00665 Gene

Subcategory (RNA class) for LINC00665 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00665 Gene

  • Long Intergenic Non-Protein Coding RNA 665 2 3 5

External Ids for LINC00665 Gene

Previous GeneCards Identifiers for LINC00665 Gene

  • GC19M036805
  • GC19M036921
  • GC19M037067
  • GC19M036374
  • GC19M036693
  • GC19M036876
  • GC19M036898
  • GC19M037411
  • GC19M037740
  • GC19M038035
  • GC19M038333

Summaries for LINC00665 Gene

GeneCards Summary for LINC00665 Gene

LINC00665 (Long Intergenic Non-Protein Coding RNA 665) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC00665 include Hepatocellular Carcinoma and Retinitis Pigmentosa 4.

Additional gene information for LINC00665 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00665 Gene

Genomics for LINC00665 Gene

GeneHancer (GH) Regulatory Elements for LINC00665 Gene

Promoters and enhancers for LINC00665 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J036330 Promoter/Enhancer 1.4 Ensembl ENCODE 650.7 +0.2 244 2.3 PKNOX1 ZNF133 SIN3A ZNF2 YY1 GLIS2 ZNF143 FOS ZNF518A ZNF610 LINC00665 ZNF383 ZNF567 ZNF345 KMT2B HAUS5 TMEM147-AS1 ZNF829 RBM42 HKR1
GH19J036213 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 56.9 +116.4 116409 3.3 MLX YBX1 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC ZNF146 ZNF565 ZNF345 ZNF567 TMEM147-AS1 ZNF850 HAUS5 ZNF790 ZNF790-AS1 PROSER3
GH19J035710 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42 +616.5 616525 10 ZFP64 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 ZNF263 SP3 ZFP41 KMT2B ZBTB32 PIR52641 ZNF567 TMEM147-AS1 ZNF529 ZNF599 ZNF461 U2AF1L4 RBM42
GH19J036915 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 44.3 -584.8 -584777 2.2 PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF416 ZNF143 ZNF548 SP3 REST ZNF568 ZNF829 GC19M039148 ZNF567 ZNF345 ZNF527 ZNF383 ZFP30 ZNF571 ZNF850
GH19J036572 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 47.5 -241.8 -241790 3 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 ZNF529 ZNF529-AS1 ZNF382 ZNF790-AS1 ZNF567 ZFP82 ZNF527 ZNF585A LINC01534 ZNF793
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00665 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00665 Gene

Genomic Locations for LINC00665 Gene
chr19:36,313,061-36,331,718
(GRCh38/hg38)
Size:
18,658 bases
Orientation:
Minus strand
chr19:36,803,963-36,822,620
(GRCh37/hg19)
Size:
18,658 bases
Orientation:
Minus strand

Genomic View for LINC00665 Gene

Genes around LINC00665 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00665 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00665 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00665 Gene

Proteins for LINC00665 Gene

Post-translational modifications for LINC00665 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00665 Gene

Domains & Families for LINC00665 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00665 Gene

Function for LINC00665 Gene

Phenotypes From GWAS Catalog for LINC00665 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00665 Gene

Localization for LINC00665 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00665 Gene

Pathways & Interactions for LINC00665 Gene

SuperPathways for LINC00665 Gene

No Data Available

Interacting Proteins for LINC00665 Gene

Gene Ontology (GO) - Biological Process for LINC00665 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00665 Gene

Drugs & Compounds for LINC00665 Gene

No Compound Related Data Available

Transcripts for LINC00665 Gene

mRNA/cDNA for LINC00665 Gene

(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(9) RNA Central transcripts :

Unigene Clusters for LINC00665 Gene

Long intergenic non-protein coding RNA 665:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00665 Gene

No ASD Table

Relevant External Links for LINC00665 Gene

GeneLoc Exon Structure for
LINC00665
ECgene alternative splicing isoforms for
LINC00665

Expression for LINC00665 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00665 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00665 Gene:

LINC00665

SOURCE GeneReport for Unigene cluster for LINC00665 Gene:

Hs.595153
genes like me logo Genes that share expression patterns with LINC00665: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00665 Gene

Orthologs for LINC00665 Gene

Evolution for LINC00665 Gene

ENSEMBL:
Gene Tree for LINC00665 (if available)
TreeFam:
Gene Tree for LINC00665 (if available)

No data available for Orthologs for LINC00665 Gene

Paralogs for LINC00665 Gene

No data available for Paralogs for LINC00665 Gene

Variants for LINC00665 Gene

Sequence variations from dbSNP and Humsavar for LINC00665 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000033577 -- 36,324,016(-) G/A intron_variant
rs1000166500 -- 36,330,175(-) A/G intron_variant
rs1000454866 -- 36,333,038(-) G/A upstream_transcript_variant
rs1000554440 -- 36,327,804(-) C/T intron_variant
rs1000568685 -- 36,332,830(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00665 Gene

Variant ID Type Subtype PubMed ID
dgv3523n100 CNV loss 25217958
dgv3524n100 CNV loss 25217958
esv2676587 CNV deletion 23128226
esv2763143 CNV loss 21179565
esv3583365 CNV loss 25503493
esv3644253 CNV gain 21293372
nsv2473 CNV insertion 18451855
nsv2474 CNV deletion 18451855
nsv509739 CNV insertion 20534489
nsv520020 CNV loss 19592680
nsv820362 CNV deletion 20802225
nsv960831 CNV duplication 23825009
nsv961213 CNV duplication 23825009
nsv9715 CNV gain+loss 18304495

Additional Variant Information for LINC00665 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00665

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00665 Gene

Disorders for LINC00665 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00665 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
retinitis pigmentosa 4
  • rp4
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00665

genes like me logo Genes that share disorders with LINC00665: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00665 Gene

Publications for LINC00665 Gene

  1. Exploring the molecular pathogenesis and biomarkers of high risk oral premalignant lesions on the basis of long noncoding RNA expression profiling by serial analysis of gene expression. (PMID: 28418939) Jia H … Sun Z (European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 2017) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Expression of the Long Intergenic Non-Protein Coding RNA 665 (LINC00665) Gene and the Cell Cycle in Hepatocellular Carcinoma Using The Cancer Genome Atlas, the Gene Expression Omnibus, and Quantitative Real-Time Polymerase Chain Reaction. (PMID: 29728556) Wen DY … Yang H (Medical science monitor : international medical journal of experimental and clinical research 2018) 3

Products for LINC00665 Gene

Sources for LINC00665 Gene

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