Aliases for LINC00665 Gene

Subcategory (RNA class) for LINC00665 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00665 Gene

  • Long Intergenic Non-Protein Coding RNA 665 2 3 5
  • LINC00665 2 168
  • HSALNG0125745 167
  • NONHSAG025649 92

External Ids for LINC00665 Gene

Previous GeneCards Identifiers for LINC00665 Gene

  • GC19M036805
  • GC19M036921
  • GC19M037067
  • GC19M036374
  • GC19M036693
  • GC19M038999
  • GC19M039140
  • GC19M039200
  • GC19M036876
  • GC19M036898
  • GC19M037411
  • GC19M037740
  • GC19M038035
  • GC19M038333
  • GC19M038628
  • GC19M038869

Summaries for LINC00665 Gene

GeneCards Summary for LINC00665 Gene

LINC00665 (Long Intergenic Non-Protein Coding RNA 665) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00665 include Hepatocellular Carcinoma.

Additional gene information for LINC00665 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00665 Gene

Genomics for LINC00665 Gene

GeneHancer (GH) Regulatory Elements for LINC00665 Gene

Promoters and enhancers for LINC00665 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00665 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00665 Gene

Genomic Locations for LINC00665 Gene
chr19:36,309,609-36,332,581
(GRCh38/hg38)
Size:
22,973 bases
Orientation:
Minus strand
chr19:36,803,963-36,822,620
(GRCh37/hg19)
Size:
18,658 bases
Orientation:
Minus strand

Genomic View for LINC00665 Gene

Genes around LINC00665 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00665 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00665 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00665 Gene

Proteins for LINC00665 Gene

Post-translational modifications for LINC00665 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00665 Gene

Domains & Families for LINC00665 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00665 Gene

Function for LINC00665 Gene

Phenotypes From GWAS Catalog for LINC00665 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00665 Gene

Localization for LINC00665 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00665 gene
Compartment Confidence
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00665 Gene

Pathways & Interactions for LINC00665 Gene

PathCards logo

SuperPathways for LINC00665 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00665 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00665 Gene

Drugs & Compounds for LINC00665 Gene

No Compound Related Data Available

Transcripts for LINC00665 Gene

mRNA/cDNA for LINC00665 Gene

54 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
24 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
15 NONCODE transcripts :
22 LncBook transcripts :
33 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00665 Gene

No ASD Table

Relevant External Links for LINC00665 Gene

GeneLoc Exon Structure for
LINC00665

Expression for LINC00665 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00665 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00665

SOURCE GeneReport for Unigene cluster for LINC00665 Gene:

Hs.595153
genes like me logo Genes that share expression patterns with LINC00665: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00665 Gene

Orthologs for LINC00665 Gene

Evolution for LINC00665 Gene

ENSEMBL:
Gene Tree for LINC00665 (if available)
TreeFam:
Gene Tree for LINC00665 (if available)

No data available for Orthologs for LINC00665 Gene

Paralogs for LINC00665 Gene

No data available for Paralogs for LINC00665 Gene

Variants for LINC00665 Gene

Additional dbSNP identifiers (rs#s) for LINC00665 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00665 Gene

Variant ID Type Subtype PubMed ID
dgv3523n100 CNV loss 25217958
dgv3524n100 CNV loss 25217958
esv2676587 CNV deletion 23128226
esv2763143 CNV loss 21179565
esv3583365 CNV loss 25503493
esv3644253 CNV gain 21293372
nsv2473 CNV insertion 18451855
nsv2474 CNV deletion 18451855
nsv509739 CNV insertion 20534489
nsv520020 CNV loss 19592680
nsv820362 CNV deletion 20802225
nsv960831 CNV duplication 23825009
nsv961213 CNV duplication 23825009
nsv9715 CNV gain+loss 18304495

Additional Variant Information for LINC00665 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00665

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00665 Gene

Disorders for LINC00665 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00665 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00665

genes like me logo Genes that share disorders with LINC00665: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00665 Gene

Publications for LINC00665 Gene

  1. Exploring the molecular pathogenesis and biomarkers of high risk oral premalignant lesions on the basis of long noncoding RNA expression profiling by serial analysis of gene expression. (PMID: 28418939) Jia H … Sun Z (European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) 2018) 2 3 54
  2. Expression of the Long Intergenic Non-Protein Coding RNA 665 (LINC00665) Gene and the Cell Cycle in Hepatocellular Carcinoma Using The Cancer Genome Atlas, the Gene Expression Omnibus, and Quantitative Real-Time Polymerase Chain Reaction. (PMID: 29728556) Wen DY … Yang H (Medical science monitor : international medical journal of experimental and clinical research 2018) 2 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00665 Gene

Sources for LINC00665 Gene