Aliases for LINC00662 Gene

Subcategory (RNA class) for LINC00662 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC00662 Gene

  • Long Intergenic Non-Protein Coding RNA 662 2 3 5
  • LINC00662 2 5 165
  • NONHSAG025376.2 91
  • NONHSAG025379.2 91
  • HSALNG0125113 164
  • CTC-459F4.2 3

External Ids for LINC00662 Gene

Previous GeneCards Identifiers for LINC00662 Gene

  • GC19M028282
  • GC19M028175
  • GC19M027684

Summaries for LINC00662 Gene

GeneCards Summary for LINC00662 Gene

LINC00662 (Long Intergenic Non-Protein Coding RNA 662) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00662 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00662 Gene

Genomics for LINC00662 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00662 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00662 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00662 Gene

Genomic Locations for LINC00662 Gene
chr19:27,663,176-27,794,301
(GRCh38/hg38)
Size:
131,126 bases
Orientation:
Minus strand
chr19:28,175,488-28,284,848
(GRCh37/hg19)
Size:
109,361 bases
Orientation:
Minus strand

Genomic View for LINC00662 Gene

Genes around LINC00662 on UCSC Golden Path with GeneCards custom track
LINC00662 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00662 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00662 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00662 Gene

Proteins for LINC00662 Gene

Post-translational modifications for LINC00662 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00662 Gene

Domains & Families for LINC00662 Gene

Gene Families for LINC00662 Gene

genes like me logo Genes that share domains with LINC00662: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00662 Gene

Function for LINC00662 Gene

Phenotypes From GWAS Catalog for LINC00662 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00662 Gene

Localization for LINC00662 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00662 gene
Compartment Confidence
cytoskeleton 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00662 Gene

Pathways & Interactions for LINC00662 Gene

PathCards logo

SuperPathways for LINC00662 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00662 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00662 Gene

Drugs & Compounds for LINC00662 Gene

No Compound Related Data Available

Transcripts for LINC00662 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00662 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057ADCC_9606 lncRNA 2480 4

Ensembl: ENST00000561521 (view in UCSC) ,

LncBook: HSALNT0257736, HSALNT0257737,

LNCipedia: LINC00662:42, LINC00662:43,

NONCODE: NONHSAT063978.2,

URS00003A4FB8_9606 lncRNA 2254 4

Ensembl: ENST00000586954 (view in UCSC) ,

LncBook: HSALNT0257773,

LNCipedia: LINC00662:29,

NONCODE: NONHSAT063992.2,

URS000041A596_9606 lncRNA 669 4

Ensembl: ENST00000586248 (view in UCSC) ,

LncBook: HSALNT0257771,

LNCipedia: LINC00662:26, LINC00662:52,

NONCODE: NONHSAT063991.2,

URS000013761E_9606 lncRNA 562 4

Ensembl: ENST00000588027 (view in UCSC) ,

LncBook: HSALNT0257688,

LNCipedia: LINC00662:25, LINC00662:55,

NONCODE: NONHSAT063962.2,

URS00004D45EA_9606 lncRNA 493 4

Ensembl: ENST00000588150 (view in UCSC) ,

LncBook: HSALNT0257712,

LNCipedia: LINC00662:38,

NONCODE: NONHSAT063968.2,

LINC00662 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00662 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00662 Gene

No ASD Table

Relevant External Links for LINC00662 Gene

GeneLoc Exon Structure for
LINC00662

Expression for LINC00662 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00662 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00662

SOURCE GeneReport for Unigene cluster for LINC00662 Gene:

Hs.706547
genes like me logo Genes that share expression patterns with LINC00662: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00662 Gene

Orthologs for LINC00662 Gene

Evolution for LINC00662 Gene

ENSEMBL:
Gene Tree for LINC00662 (if available)
TreeFam:
Gene Tree for LINC00662 (if available)

No data available for Orthologs for LINC00662 Gene

Paralogs for LINC00662 Gene

No data available for Paralogs for LINC00662 Gene

Variants for LINC00662 Gene

Additional dbSNP identifiers (rs#s) for LINC00662 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00662 Gene

Variant ID Type Subtype PubMed ID
dgv3500n100 CNV gain 25217958
dgv3501n100 CNV gain 25217958
dgv658e214 CNV gain 21293372
esv2762966 CNV gain+loss 21179565
esv3574397 CNV gain 25503493
esv3644065 CNV gain 21293372
esv3893194 CNV gain 25118596
nsv1058414 CNV gain 25217958
nsv1059005 CNV gain 25217958
nsv1066314 CNV loss 25217958
nsv579196 CNV gain 21841781

Additional Variant Information for LINC00662 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00662

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00662 Gene

Disorders for LINC00662 Gene

No disorders were found for LINC00662 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00662 Gene

Publications for LINC00662 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. High expression of long intergenic non-coding RNA LINC00662 contributes to malignant growth of acute myeloid leukemia cells by upregulating ROCK1 via sponging microRNA-340-5p. (PMID: 31306637) Liu Y … Tian X (European journal of pharmacology 2019) 3
  3. Long non-coding RNA Linc00662 promotes cell invasion and contributes to cancer stem cell-like phenotypes in lung cancer cells. (PMID: 30256974) Gong W … Wang X (Journal of biochemistry 2018) 3
  4. LINC00662 promotes gastric cancer cell growth by modulating the Hippo-YAP1 pathway. (PMID: 30297104) Liu Z … Deng J (Biochemical and biophysical research communications 2018) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00662 Gene

Sources for LINC00662 Gene