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Aliases for LINC00661 Gene

Subcategory (RNA class) for LINC00661 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00661 Gene

  • Long Intergenic Non-Protein Coding RNA 661 2 3 5

External Ids for LINC00661 Gene

Previous GeneCards Identifiers for LINC00661 Gene

  • GC19P016432
  • GC19P017114
  • GC19P017383
  • GC19P017935
  • GC19P016018
  • GC19P016727
  • GC19P020400
  • GC19P016905
  • GC19P017739
  • GC19P018416
  • GC19P018781
  • GC19P019099
  • GC19P019419
  • GC19P019700
  • GC19P020146

Summaries for LINC00661 Gene

GeneCards Summary for LINC00661 Gene

LINC00661 (Long Intergenic Non-Protein Coding RNA 661) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00661 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00661 Gene

Genomics for LINC00661 Gene

GeneHancer (GH) Regulatory Elements for LINC00661 Gene

Promoters and enhancers for LINC00661 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J016014 Enhancer 0.4 Ensembl 606.4 -0.7 -686 0.4 CBFA2T2 DACH1 LINC00661 GC19P021036 GC19P021134 GC19P021368 PIR33099 PIR50455 PIR51070 PIR32466 PIR54466 PIR43414
GH19J016001 Enhancer 0.7 ENCODE 18.3 -12.9 -12931 1.9 ZNF652 CEBPG RELA SP1 PRDM1 POLR2A RXRA CEBPA ZNF7 IRF2 LINC00661 CYP4F11 OR10H4 PIRC97 CYP4F9P PIR39391
GH19J016000 Enhancer 0.5 Ensembl 17.4 -15.1 -15086 0.4 ZNF652 IKZF1 RUNX3 JUNB IRF4 BATF CYP4F9P PIR55140 LINC00661 CYP4F11 PIRC97 PIR39391
GH19J015974 Enhancer 0.8 FANTOM5 Ensembl 4.6 -40.8 -40787 2.6 PKNOX1 ZNF217 DPF2 GATA3 TCF7L2 CYP4F11 LINC00661 TPM4 GC19M015964 PIRC97
GH19J015983 Enhancer 0.2 Ensembl 4.6 -31.6 -31586 0.2 OR10H4 CYP4F11 OR10H5 LINC00661 PIRC97 CYP4F9P GC19M015964
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00661 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00661 Gene

Genomic Locations for LINC00661 Gene
chr19:16,015,287-16,027,462
(GRCh38/hg38)
Size:
12,176 bases
Orientation:
Plus strand
chr19:16,126,097-16,138,272
(GRCh37/hg19)
Size:
12,176 bases
Orientation:
Plus strand

Genomic View for LINC00661 Gene

Genes around LINC00661 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00661 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00661 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00661 Gene

Proteins for LINC00661 Gene

Post-translational modifications for LINC00661 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00661 Gene

Domains & Families for LINC00661 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00661 Gene

Function for LINC00661 Gene

Phenotypes From GWAS Catalog for LINC00661 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00661 Gene

Localization for LINC00661 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00661 Gene

Pathways & Interactions for LINC00661 Gene

PathCards logo

SuperPathways for LINC00661 Gene

No Data Available

Interacting Proteins for LINC00661 Gene

Gene Ontology (GO) - Biological Process for LINC00661 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00661 Gene

Drugs & Compounds for LINC00661 Gene

No Compound Related Data Available

Transcripts for LINC00661 Gene

mRNA/cDNA for LINC00661 Gene

(16) Additional mRNA sequences :
(16) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LINC00661 Gene

Long intergenic non-protein coding RNA 661:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00661 Gene

No ASD Table

Relevant External Links for LINC00661 Gene

GeneLoc Exon Structure for
LINC00661
ECgene alternative splicing isoforms for
LINC00661

Expression for LINC00661 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00661 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00661 Gene

This gene is overexpressed in Testis (x51.8).

NURSA nuclear receptor signaling pathways regulating expression of LINC00661 Gene:

LINC00661

SOURCE GeneReport for Unigene cluster for LINC00661 Gene:

Hs.131824
genes like me logo Genes that share expression patterns with LINC00661: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00661 Gene

Orthologs for LINC00661 Gene

Evolution for LINC00661 Gene

ENSEMBL:
Gene Tree for LINC00661 (if available)
TreeFam:
Gene Tree for LINC00661 (if available)

No data available for Orthologs for LINC00661 Gene

Paralogs for LINC00661 Gene

No data available for Paralogs for LINC00661 Gene

Variants for LINC00661 Gene

Sequence variations from dbSNP and Humsavar for LINC00661 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000144801 -- 16,024,756(+) G/A intron_variant
rs1000203289 -- 16,019,929(+) G/A intron_variant
rs1000215751 -- 16,023,657(+) G/T intron_variant
rs1000428688 -- 16,024,163(+) T/C intron_variant
rs1000520051 -- 16,024,508(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00661 Gene

Variant ID Type Subtype PubMed ID
dgv200n21 CNV loss 19592680
nsv1064684 CNV gain 25217958
nsv578734 CNV loss 21841781

Additional Variant Information for LINC00661 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00661

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00661 Gene

Disorders for LINC00661 Gene

Additional Disease Information for LINC00661

No disorders were found for LINC00661 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00661 Gene

Publications for LINC00661 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  3. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. (PMID: 11441184) Dehal P … Stubbs L (Science (New York, N.Y.) 2001) 3 58

Products for LINC00661 Gene

Sources for LINC00661 Gene

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