Aliases for LINC00661 Gene

Subcategory (RNA class) for LINC00661 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00661 Gene

  • Long Intergenic Non-Protein Coding RNA 661 2 3 5
  • LINC00661 2 5 165
  • NONHSAG025017.2 91
  • HSALNG0124410 164

External Ids for LINC00661 Gene

Previous GeneCards Identifiers for LINC00661 Gene

  • GC19P016432
  • GC19P017114
  • GC19P017383
  • GC19P017935
  • GC19P016018
  • GC19P016727
  • GC19P020400
  • GC19P020537
  • GC19P020575
  • GC19P022198
  • GC19P016905
  • GC19P017739
  • GC19P018416
  • GC19P018781
  • GC19P019099
  • GC19P019419
  • GC19P019700
  • GC19P020146

Summaries for LINC00661 Gene

GeneCards Summary for LINC00661 Gene

LINC00661 (Long Intergenic Non-Protein Coding RNA 661) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00661 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00661 Gene

Genomics for LINC00661 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00661 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J016001 Enhancer 0.7 ENCODE 18.3 -11.5 -11467 1.9 ZNF7 PRDM1 RELA IRF2 SP1 POLR2A CEBPA RELB CEBPB CEBPG LINC00661 CYP4F11 OR10H4 CYP4F9P LINC00905 TPM4
GH19J016025 Enhancer 0.6 ENCODE 0.4 +12.0 12043 0.2 CTCF REST SMC3 FOSL1 MAX MAZ DEK RAD21 BHLHE40 FOSL2 piR-32642 piR-32793 piR-32820 piR-32824 piR-33259 piR-31324 piR-31411 piR-37894 piR-39546 piR-32036
GH19J016028 Enhancer 0.2 Ensembl 0.4 +15.1 15078 0.2 piR-42370-010 piR-60112-008 piR-57388 SNX33P1 LINC00661 LINC00905 TPM4 OR10H4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00661 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00661 Gene

Genomic Locations for LINC00661 Gene
chr19:16,013,823-16,028,837
(GRCh38/hg38)
Size:
15,015 bases
Orientation:
Plus strand
chr19:16,126,097-16,138,272
(GRCh37/hg19)
Size:
12,176 bases
Orientation:
Plus strand

Genomic View for LINC00661 Gene

Genes around LINC00661 on UCSC Golden Path with GeneCards custom track
LINC00661 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00661 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00661 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00661 Gene

Proteins for LINC00661 Gene

Post-translational modifications for LINC00661 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00661 Gene

Domains & Families for LINC00661 Gene

Gene Families for LINC00661 Gene

genes like me logo Genes that share domains with LINC00661: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00661 Gene

Function for LINC00661 Gene

Phenotypes From GWAS Catalog for LINC00661 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00661 Gene

Localization for LINC00661 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00661 Gene

Pathways & Interactions for LINC00661 Gene

PathCards logo

SuperPathways for LINC00661 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00661 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00661 Gene

Drugs & Compounds for LINC00661 Gene

No Compound Related Data Available

Transcripts for LINC00661 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00661 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B8C69_9606 lncRNA 569 4

Ensembl: ENST00000549718 (view in UCSC) ,

LncBook: HSALNT0256398,

LNCipedia: LINC00661:8,

NONCODE: NONHSAT061539.2,

URS00008B5A5B_9606 lncRNA 544 4

Ensembl: ENST00000546512 (view in UCSC) ,

LncBook: HSALNT0256395, HSALNT0256396,

LNCipedia: LINC00661:5, LINC00661:6,

NONCODE: NONHSAT061535.2, NONHSAT061536.2,

URS00008B903B_9606 lncRNA 1130 3

Ensembl: ENST00000552608 (view in UCSC) ,

LncBook: HSALNT0256406,

LNCipedia: LINC00661:16,

URS00008BC452_9606 lncRNA 619 3

Ensembl: ENST00000547102 (view in UCSC) ,

LncBook: HSALNT0256408,

LNCipedia: LINC00661:17,

URS00008B5396_9606 lncRNA 577 3

Ensembl: ENST00000552685 (view in UCSC) ,

LncBook: HSALNT0256410, HSALNT0256411,

LNCipedia: LINC00661:22,

LINC00661 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00661 Gene

16 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00661 Gene

No ASD Table

Relevant External Links for LINC00661 Gene

GeneLoc Exon Structure for
LINC00661

Expression for LINC00661 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00661 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00661 Gene

This gene is overexpressed in Testis (x51.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00661

SOURCE GeneReport for Unigene cluster for LINC00661 Gene:

Hs.131824
genes like me logo Genes that share expression patterns with LINC00661: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00661 Gene

Orthologs for LINC00661 Gene

Evolution for LINC00661 Gene

ENSEMBL:
Gene Tree for LINC00661 (if available)
TreeFam:
Gene Tree for LINC00661 (if available)

No data available for Orthologs for LINC00661 Gene

Paralogs for LINC00661 Gene

No data available for Paralogs for LINC00661 Gene

Variants for LINC00661 Gene

Additional dbSNP identifiers (rs#s) for LINC00661 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00661 Gene

Variant ID Type Subtype PubMed ID
dgv200n21 CNV loss 19592680
nsv1064684 CNV gain 25217958
nsv578734 CNV loss 21841781

Additional Variant Information for LINC00661 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00661

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00661 Gene

Disorders for LINC00661 Gene

No disorders were found for LINC00661 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00661 Gene

Publications for LINC00661 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  3. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. (PMID: 11441184) Dehal P … Stubbs L (Science (New York, N.Y.) 2001) 3

Products for LINC00661 Gene

Sources for LINC00661 Gene