Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC00652 Gene

Subcategory (RNA class) for LINC00652 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC00652 Gene

  • Long Intergenic Non-Protein Coding RNA 652 2 3 5
  • HSPC072 3

External Ids for LINC00652 Gene

Summaries for LINC00652 Gene

GeneCards Summary for LINC00652 Gene

LINC00652 (Long Intergenic Non-Protein Coding RNA 652) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00652 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00652 Gene

Genomics for LINC00652 Gene

GeneHancer (GH) Regulatory Elements for LINC00652 Gene

Promoters and enhancers for LINC00652 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I018793 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 +0.4 354 1.5 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 ZNF766 E2F8 ZNF207 ZNF143 LOC100270804 LINC00652 ZNF133
GH20I018465 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.7 +327.5 327502 3 PKNOX1 CLOCK ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 DZANK1 POLR3F GCNT1P1 LINC00652 DTD1 RNA5SP476
GH20I018585 Enhancer 1.1 FANTOM5 ENCODE 10.7 +209.1 209146 0.6 HDAC1 ELF3 PKNOX1 FOXA2 RARA SCRT2 ZNF548 ATF7 ZNF214 THAP11 ZNF133 LOC100270804 POLR3F LOC100286962 DZANK1 LINC00652 DTD1 SEC23B RN7SL638P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00652 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00652 Gene

Genomic Locations for LINC00652 Gene
8,520 bases
Minus strand

Genomic View for LINC00652 Gene

Genes around LINC00652 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00652 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00652 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00652 Gene

Proteins for LINC00652 Gene

Post-translational modifications for LINC00652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00652 Gene

Domains & Families for LINC00652 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00652 Gene

Function for LINC00652 Gene

genes like me logo Genes that share phenotypes with LINC00652: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00652 Gene

Localization for LINC00652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00652 Gene

Pathways & Interactions for LINC00652 Gene

SuperPathways for LINC00652 Gene

No Data Available

Interacting Proteins for LINC00652 Gene

Gene Ontology (GO) - Biological Process for LINC00652 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC00652 Gene

Drugs & Compounds for LINC00652 Gene

No Compound Related Data Available

Transcripts for LINC00652 Gene

mRNA/cDNA for LINC00652 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(23) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00652 Gene

Long intergenic non-protein coding RNA 652:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00652 Gene

No ASD Table

Relevant External Links for LINC00652 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC00652 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00652 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00652 Gene:


SOURCE GeneReport for Unigene cluster for LINC00652 Gene:

genes like me logo Genes that share expression patterns with LINC00652: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00652 Gene

Orthologs for LINC00652 Gene

Evolution for LINC00652 Gene

Gene Tree for LINC00652 (if available)
Gene Tree for LINC00652 (if available)

No data available for Orthologs for LINC00652 Gene

Paralogs for LINC00652 Gene

No data available for Paralogs for LINC00652 Gene

Variants for LINC00652 Gene

Sequence variations from dbSNP and Humsavar for LINC00652 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000059830 -- 18,795,011(-) A/G upstream_transcript_variant
rs1000114033 -- 18,788,324(-) G/A non_coding_transcript_variant
rs1000355332 -- 18,791,293(-) G/A intron_variant
rs1000963668 -- 18,796,065(-) A/G upstream_transcript_variant
rs1001128362 -- 18,790,281(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00652 Gene

Variant ID Type Subtype PubMed ID
nsv833934 CNV loss 17160897
nsv1122029 CNV deletion 24896259

Additional Variant Information for LINC00652 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00652 Gene

Disorders for LINC00652 Gene

Additional Disease Information for LINC00652

No disorders were found for LINC00652 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00652 Gene

Publications for LINC00652 Gene

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang QH … Chen Z (Genome research 2000) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00652 Gene

Sources for LINC00652 Gene

Loading form....