Aliases for LINC00649 Gene

Data sources for LINC00649 Gene:

RNA type for LINC00649 Gene

lncRNA

Aliases for LINC00649 Gene

External Ids for LINC00649 Gene

Previous GeneCards Identifiers for LINC00649 Gene

  • GC21P035305

Summaries for LINC00649 Gene

GeneCards Summary for LINC00649 Gene

LINC00649 (Long Intergenic Non-Protein Coding RNA 649) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00649 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00649 Gene

Genomics for LINC00649 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00649 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00649 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00649 Gene

Latest Assembly
chr21:33,915,534-34,003,026
(GRCh38/hg38)
Size:
87,493 bases
Orientation:
Plus strand

Previous Assembly
chr21:35,303,426-35,343,487
(GRCh37/hg19 by Entrez Gene)
Size:
40,062 bases
Orientation:
Plus strand

chr21:35,287,838-35,349,992
(GRCh37/hg19 by Ensembl)
Size:
62,155 bases
Orientation:
Plus strand

Genomic View for LINC00649 Gene

Genes around LINC00649 on UCSC Golden Path with GeneCards custom track
LINC00649 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00649 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00649 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00649 Gene

Proteins for LINC00649 Gene

Post-translational modifications for LINC00649 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00649 Gene

Domains & Families for LINC00649 Gene

Gene Families for LINC00649 Gene

genes like me logo Genes that share domains with LINC00649: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00649 Gene

Function for LINC00649 Gene

Phenotypes From GWAS Catalog for LINC00649 Gene

Phenotypes for LINC00649 Gene

GenomeRNAi human phenotypes for LINC00649:
genes like me logo Genes that share phenotypes with LINC00649: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00649 Gene

Localization for LINC00649 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00649 Gene

Pathways & Interactions for LINC00649 Gene

PathCards logo

SuperPathways for LINC00649 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00649 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00649 Gene

Drugs & Compounds for LINC00649 Gene

No Compound Related Data Available

Transcripts for LINC00649 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00649 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005AEAB0_9606 lncRNA 2090 5

RefSeq: NR_134558,

Ensembl: ENST00000400353 (view in UCSC) ,

LncBook: HSALNT0272987,

LNCipedia: LINC00649:9,

NONCODE: NONHSAT081841.2,

URS00004F82E9_9606 lncRNA 1111 4

Ensembl: ENST00000600155 (view in UCSC) ,

LncBook: HSALNT0273007,

LNCipedia: LINC00649:21,

NONCODE: NONHSAT081850.2,

URS000008457A_9606 lncRNA 799 4

Ensembl: ENST00000595747 (view in UCSC) ,

LncBook: HSALNT0273000,

LNCipedia: LINC00649:18,

NONCODE: NONHSAT081848.2,

URS0000780C26_9606 lncRNA 781 4

Ensembl: ENST00000620580 (view in UCSC) ,

LncBook: HSALNT0273015,

LNCipedia: LINC00649:24,

NONCODE: NONHSAT190906.1,

URS000025611F_9606 lncRNA 700 4

Ensembl: ENST00000594370 (view in UCSC) ,

LncBook: HSALNT0272998,

LNCipedia: LINC00649:17,

NONCODE: NONHSAT081847.2,

LINC00649 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00649 Gene

2 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00649 Gene

No ASD Table

Relevant External Links for LINC00649 Gene

GeneLoc Exon Structure for
LINC00649

Expression for LINC00649 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00649 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00649

SOURCE GeneReport for Unigene cluster for LINC00649 Gene:

Hs.532855
genes like me logo Genes that share expression patterns with LINC00649: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00649 Gene

Orthologs for LINC00649 Gene

Evolution for LINC00649 Gene

ENSEMBL:
Gene Tree for LINC00649 (if available)
TreeFam:
Gene Tree for LINC00649 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00649

No data available for Orthologs for LINC00649 Gene

Paralogs for LINC00649 Gene

No data available for Paralogs for LINC00649 Gene

Variants for LINC00649 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00649 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00649 Gene

Variant ID Type Subtype PubMed ID
dgv2383n106 CNV insertion 24896259
dgv2384n106 CNV deletion 24896259
esv3646912 CNV gain 21293372
nsv1073126 CNV deletion 25765185
nsv587399 CNV gain 21841781
nsv587401 CNV gain 21841781

Additional Variant Information for LINC00649 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00649
Leiden Open Variation Database (LOVD)
LINC00649

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00649 Gene

Disorders for LINC00649 Gene

Additional Disease Information for LINC00649

No disorders were found for LINC00649 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00649 Gene

Publications for LINC00649 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu XY … Wang YP (BioMed research international 2015) 2 3
  2. Lnc-ITSN1-2, Derived From RNA Sequencing, Correlates With Increased Disease Risk, Activity and Promotes CD4+ T Cell Activation, Proliferation and Th1/Th17 Cell Differentiation by Serving as a ceRNA for IL-23R via Sponging miR-125a in Inflammatory Bowel Disease. (PMID: 32547537) Nie J … Zhao Q (Frontiers in immunology 2020) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for LINC00649 Gene

Sources for LINC00649 Gene