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Aliases for LINC00649 Gene

Subcategory (RNA class) for LINC00649 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00649 Gene

  • Long Intergenic Non-Protein Coding RNA 649 2 3 5
  • TCONS_00028768 3

External Ids for LINC00649 Gene

Previous GeneCards Identifiers for LINC00649 Gene

  • GC21P035305

Summaries for LINC00649 Gene

GeneCards Summary for LINC00649 Gene

LINC00649 (Long Intergenic Non-Protein Coding RNA 649) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00649 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00649 Gene

Genomics for LINC00649 Gene

GeneHancer (GH) Regulatory Elements for LINC00649 Gene

Promoters and enhancers for LINC00649 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I033913 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 559.2 -0.2 -152 3 PKNOX1 SMAD1 ARID4B SIN3A IRF4 YY1 SLC30A9 POLR2B ZNF766 ZNF207 ATP5PO LINC00649 OLIG2 SON PIR61544 ENSG00000249209 GC21P033513
GH21I033931 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 28.9 +17.5 17473 3.8 HDAC1 IRF2 ZBTB6 NFRKB ETV1 CEBPG ZBTB40 YY1 POLR2A FOXK2 ENSG00000249209 LINC00649 ATP5PO ENSG00000273102 GC21P033513
GH21I033945 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 18 +33.5 33522 7.3 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 IRF4 LINC00649 ATP5PO BTF3P6 GART SON ENSG00000273102 ENSG00000249209 GC21P033513
GH21I033935 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 16.9 +22.9 22918 5.8 BCOR ZNF146 MAX ZMYM3 ZNF384 BATF ZKSCAN1 ZNF316 PHF20 ADNP LINC00649 ATP5PO SLC5A3 MRPS6 ENSG00000214955 GART SON ENSG00000249209 ENSG00000273102 GC21P033513
GH21I033968 Enhancer 1.4 Ensembl ENCODE dbSUPER 16.8 +54.8 54779 4.6 PKNOX1 ATF1 ARNT FEZF1 DMAP1 ZNF2 YY1 ETS1 ZNF121 ZNF143 ENSG00000273102 GC21M033955 TMEM50B SON DONSON LINC00649 ATP5PO MRPS6 SLC5A3 ENSG00000214955
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00649 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00649 Gene

Genomic Locations for LINC00649 Gene
chr21:33,915,534-33,977,691
(GRCh38/hg38)
Size:
62,158 bases
Orientation:
Plus strand
chr21:35,287,838-35,349,992
(GRCh37/hg19)

Genomic View for LINC00649 Gene

Genes around LINC00649 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00649 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00649 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00649 Gene

Proteins for LINC00649 Gene

Post-translational modifications for LINC00649 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00649 Gene

Domains & Families for LINC00649 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00649 Gene

Function for LINC00649 Gene

Phenotypes From GWAS Catalog for LINC00649 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00649 Gene

Localization for LINC00649 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00649 Gene

Pathways & Interactions for LINC00649 Gene

SuperPathways for LINC00649 Gene

No Data Available

Interacting Proteins for LINC00649 Gene

Gene Ontology (GO) - Biological Process for LINC00649 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00649 Gene

Drugs & Compounds for LINC00649 Gene

No Compound Related Data Available

Transcripts for LINC00649 Gene

mRNA/cDNA for LINC00649 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(20) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00649 Gene

Long intergenic non-protein coding RNA 649:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00649 Gene

No ASD Table

Relevant External Links for LINC00649 Gene

GeneLoc Exon Structure for
LINC00649
ECgene alternative splicing isoforms for
LINC00649

Expression for LINC00649 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00649 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00649 Gene:

LINC00649

SOURCE GeneReport for Unigene cluster for LINC00649 Gene:

Hs.532855
genes like me logo Genes that share expression patterns with LINC00649: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00649 Gene

Orthologs for LINC00649 Gene

Evolution for LINC00649 Gene

ENSEMBL:
Gene Tree for LINC00649 (if available)
TreeFam:
Gene Tree for LINC00649 (if available)

No data available for Orthologs for LINC00649 Gene

Paralogs for LINC00649 Gene

No data available for Paralogs for LINC00649 Gene

Variants for LINC00649 Gene

Sequence variations from dbSNP and Humsavar for LINC00649 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000046205 -- 33,935,244(+) T/C intron_variant
rs1000059713 -- 33,971,525(+) A/G downstream_transcript_variant
rs1000210820 -- 33,938,210(+) T/A/C intron_variant
rs1000292199 -- 33,965,335(+) G/T genic_downstream_transcript_variant, intron_variant
rs1000314599 -- 33,941,392(+) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00649 Gene

Variant ID Type Subtype PubMed ID
nsv587401 CNV gain 21841781
nsv587399 CNV gain 21841781
nsv1073126 CNV deletion 25765185
esv3646912 CNV gain 21293372
dgv2384n106 CNV deletion 24896259
dgv2383n106 CNV insertion 24896259

Additional Variant Information for LINC00649 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00649

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00649 Gene

Disorders for LINC00649 Gene

Additional Disease Information for LINC00649

No disorders were found for LINC00649 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00649 Gene

Publications for LINC00649 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu XY … Wang YP (BioMed research international 2015) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC00649 Gene

Sources for LINC00649 Gene

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