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Aliases for LINC00638 Gene

Subcategory (RNA class) for LINC00638 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00638 Gene

  • Long Intergenic Non-Protein Coding RNA 638 2 3 5

External Ids for LINC00638 Gene

Previous GeneCards Identifiers for LINC00638 Gene

  • GC14P105289

Summaries for LINC00638 Gene

GeneCards Summary for LINC00638 Gene

LINC00638 (Long Intergenic Non-Protein Coding RNA 638) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00638 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00638 Gene

Genomics for LINC00638 Gene

GeneHancer (GH) Regulatory Elements for LINC00638 Gene

Promoters and enhancers for LINC00638 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I104820 Enhancer 1 Ensembl ENCODE 550.8 -0.2 -154 1.5 ELF3 FOXA2 ARID4B KLF17 SIN3A DMAP1 THRB ZNF48 RAD21 ZNF143 LINC00638 MTA1 ENSG00000257270 CEP170B ENSG00000279140
GH14I104814 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 34.8 -5.4 -5403 2.8 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ENSG00000279140 MTA1 LINC00638 ENSG00000257270 CDCA4 TMEM121 PACS2 CEP170B CRIP2
GH14I104665 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 20.7 -154.7 -154691 2.9 HDGF FOXA2 YBX1 DMAP1 ZBTB7B ZNF302 ZNF207 FOS SP5 ZHX2 LINC02280 MTA1 XRCC3 ENSG00000257270 CDCA4 LINC00638 BRF1 ENSG00000270591 TMEM121 RPS20P33
GH14I104825 Enhancer 1.1 Ensembl ENCODE 25 +5.7 5708 2.9 ARID4B SIN3A ZBTB7B ZNF48 GLIS2 ZNF143 KLF7 SP3 SP5 NFYC LINC00638 ADSSL1 CEP170B RPS26P49
GH14I104966 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10 +151.3 151258 12.3 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF2 ZBTB7B ZNF207 ZNF143 FOS AHNAK2 MTA1 CLBA1 BRF1 CDCA4 LINC00638 ENSG00000257270 GPR132 IGHE CEP170B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00638 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00638 Gene

Genomic Locations for LINC00638 Gene
chr14:104,821,201-104,823,718
(GRCh38/hg38)
Size:
2,518 bases
Orientation:
Plus strand
chr14:105,287,538-105,290,055
(GRCh37/hg19)

Genomic View for LINC00638 Gene

Genes around LINC00638 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00638 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00638 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00638 Gene

Proteins for LINC00638 Gene

Post-translational modifications for LINC00638 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00638 Gene

Domains & Families for LINC00638 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00638 Gene

Function for LINC00638 Gene

Phenotypes From GWAS Catalog for LINC00638 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00638 Gene

Localization for LINC00638 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00638 Gene

Pathways & Interactions for LINC00638 Gene

SuperPathways for LINC00638 Gene

No Data Available

Interacting Proteins for LINC00638 Gene

Gene Ontology (GO) - Biological Process for LINC00638 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00638 Gene

Drugs & Compounds for LINC00638 Gene

No Compound Related Data Available

Transcripts for LINC00638 Gene

mRNA/cDNA for LINC00638 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00638 Gene

Long intergenic non-protein coding RNA 638:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00638 Gene

No ASD Table

Relevant External Links for LINC00638 Gene

GeneLoc Exon Structure for
LINC00638
ECgene alternative splicing isoforms for
LINC00638

Expression for LINC00638 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00638 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00638 Gene:

LINC00638

SOURCE GeneReport for Unigene cluster for LINC00638 Gene:

Hs.352220
genes like me logo Genes that share expression patterns with LINC00638: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00638 Gene

Orthologs for LINC00638 Gene

Evolution for LINC00638 Gene

ENSEMBL:
Gene Tree for LINC00638 (if available)
TreeFam:
Gene Tree for LINC00638 (if available)

No data available for Orthologs for LINC00638 Gene

Paralogs for LINC00638 Gene

No data available for Paralogs for LINC00638 Gene

Variants for LINC00638 Gene

Sequence variations from dbSNP and Humsavar for LINC00638 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000334935 -- 104,819,331(+) A/G upstream_transcript_variant
rs1001048013 -- 104,822,776(+) T/C non_coding_transcript_variant
rs1001237554 -- 104,824,062(+) G/A downstream_transcript_variant
rs1001498467 -- 104,819,245(+) T/G upstream_transcript_variant
rs1002642530 -- 104,821,703(+) A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00638 Gene

Variant ID Type Subtype PubMed ID
dgv3953n54 CNV gain 21841781
esv3635627 CNV gain 21293372
nsv1054574 CNV loss 25217958
nsv470677 CNV loss 18288195
nsv511540 CNV gain 21212237
nsv517038 CNV loss 19592680
nsv566057 CNV gain+loss 21841781
nsv566093 CNV loss 21841781
nsv566099 CNV gain 21841781

Additional Variant Information for LINC00638 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00638

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00638 Gene

Disorders for LINC00638 Gene

Additional Disease Information for LINC00638

No disorders were found for LINC00638 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00638 Gene

Publications for LINC00638 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00638 Gene

Sources for LINC00638 Gene

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