Aliases for LINC00634 Gene

Subcategory (RNA class) for LINC00634 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00634 Gene

  • Long Intergenic Non-Protein Coding RNA 634 2 3 5 13
  • HSALNG0141619 167
  • NONHSAG034034 92
  • Lnc-SEPT3-6 168
  • BK250D10.8 3
  • LINC00634 2

External Ids for LINC00634 Gene

Previous GeneCards Identifiers for LINC00634 Gene

  • GC22P042352

Summaries for LINC00634 Gene

GeneCards Summary for LINC00634 Gene

LINC00634 (Long Intergenic Non-Protein Coding RNA 634) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00634 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00634 Gene

Genomics for LINC00634 Gene

GeneHancer (GH) Regulatory Elements for LINC00634 Gene

Promoters and enhancers for LINC00634 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J041953 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 500.7 0.0 -19 0.2 EP300 USF1 RFX1 MXI1 TCF12 SMC3 MEF2B BMI1 HIC1 SIN3A LINC00634 SMDT1 CENPM
GH22J041950 Enhancer 0.8 ENCODE CraniofacialAtlas 500.7 -0.7 -704 0.8 CTCF ZIC2 ZNF263 MEF2B IKZF3 EBF1 IKZF1 ZBTB7A RAD21 ZFP69B LINC00634 CYP2D6 WBP2NL CENPM
GH22J041952 Enhancer 0.6 ENCODE 500.7 +0.2 211 0.2 EP300 TCF12 SMC3 MEF2B EBF1 BMI1 HIC1 SIN3A CTCF RFX5 LINC00634 SMDT1 lnc-CENPM-2
GH22J041954 Promoter 0.6 Ensembl 500.7 +0.8 800 0.2 GLIS1 GLIS2 PATZ1 ZNF394 LINC00634 lnc-CENPM-2
GH22J042021 Enhancer 0.7 Ensembl ENCODE 7.3 +70.2 70190 2.4 ZIC2 SPI1 ELF1 IKZF1 NFE2 GLIS1 ELF4 ZNF507 GABPB1 IKZF2 SMDT1 CYP2D6 WBP2NL SLC25A5P1 SEPTIN3 NAGA PHETA2 TCF20 LINC00634 NDUFA6-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00634 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00634 Gene

Genomic Locations for LINC00634 Gene
chr22:41,952,101-41,958,953
(GRCh38/hg38)
Size:
6,853 bases
Orientation:
Plus strand
chr22:42,348,169-42,354,946
(GRCh37/hg19)
Size:
6,778 bases
Orientation:
Plus strand

Genomic View for LINC00634 Gene

Genes around LINC00634 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00634 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00634 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00634 Gene

Proteins for LINC00634 Gene

  • Protein details for LINC00634 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A590UK49-A0A590UK49_HUMAN
    Recommended name:
    Long intergenic non-protein coding RNA 634
    Protein Accession:
    A0A590UK49

    Protein attributes for LINC00634 Gene

    Size:
    68 amino acids
    Molecular mass:
    7965 Da
    Quaternary structure:
    No Data Available
  • Protein details for LINC00634 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A590UK83-A0A590UK83_HUMAN
    Recommended name:
    Long intergenic non-protein coding RNA 634
    Protein Accession:
    A0A590UK83

    Protein attributes for LINC00634 Gene

    Size:
    107 amino acids
    Molecular mass:
    12178 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00634 Gene

Post-translational modifications for LINC00634 Gene

No Post-translational modifications

Other Protein References for LINC00634 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LINC00634 Gene

Domains & Families for LINC00634 Gene

Protein Domains for LINC00634 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC00634: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00634 Gene

Function for LINC00634 Gene

Phenotypes From GWAS Catalog for LINC00634 Gene

Phenotypes for LINC00634 Gene

genes like me logo Genes that share phenotypes with LINC00634: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00634 Gene

Localization for LINC00634 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00634 Gene

Pathways & Interactions for LINC00634 Gene

PathCards logo

SuperPathways for LINC00634 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00634 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00634 Gene

Drugs & Compounds for LINC00634 Gene

No Compound Related Data Available

Transcripts for LINC00634 Gene

mRNA/cDNA for LINC00634 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00634 Gene

No ASD Table

Relevant External Links for LINC00634 Gene

GeneLoc Exon Structure for
LINC00634

Expression for LINC00634 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00634 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00634 Gene

This gene is overexpressed in Brain - Hippocampus (x6.4), Brain - Putamen (basal ganglia) (x6.1), Brain - Nucleus accumbens (basal ganglia) (x6.0), Brain - Caudate (basal ganglia) (x5.5), Brain - Amygdala (x5.1), Brain - Cortex (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.8), and Brain - Frontal Cortex (BA9) (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00634

SOURCE GeneReport for Unigene cluster for LINC00634 Gene:

Hs.517656
genes like me logo Genes that share expression patterns with LINC00634: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00634 Gene

Orthologs for LINC00634 Gene

Evolution for LINC00634 Gene

ENSEMBL:
Gene Tree for LINC00634 (if available)
TreeFam:
Gene Tree for LINC00634 (if available)

No data available for Orthologs for LINC00634 Gene

Paralogs for LINC00634 Gene

No data available for Paralogs for LINC00634 Gene

Variants for LINC00634 Gene

Additional dbSNP identifiers (rs#s) for LINC00634 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00634 Gene

Variant ID Type Subtype PubMed ID
esv3647806 CNV loss 21293372
nsv1057208 CNV gain 25217958
nsv1139067 CNV deletion 24896259
nsv508736 CNV insertion 20534489

Additional Variant Information for LINC00634 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00634

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00634 Gene

Disorders for LINC00634 Gene

Additional Disease Information for LINC00634

No disorders were found for LINC00634 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00634 Gene

Publications for LINC00634 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 54
  3. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I … O'Brien KP (Nature 1999) 13 54

Products for LINC00634 Gene

Sources for LINC00634 Gene