Aliases for LINC00632 Gene

Data sources for LINC00632 Gene:

Subcategory (RNA class) for LINC00632 Gene

lncRNA

Aliases for LINC00632 Gene

External Ids for LINC00632 Gene

Previous GeneCards Identifiers for LINC00632 Gene

  • GC0XP139795

Summaries for LINC00632 Gene

GeneCards Summary for LINC00632 Gene

LINC00632 (Long Intergenic Non-Protein Coding RNA 632) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00632 include Panhypopituitarism, X-Linked.

Additional gene information for LINC00632 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00632 Gene

Genomics for LINC00632 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00632 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ140710 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 250.7 +2.2 2218 4.4 VEZF1 ZNF341 BHLHE40 YY1 PRDM10 NRF1 TAF1 ZNF547 FOXM1 CHD1 LINC00632 ATP11C CDR1 lnc-SPANXB1-7 lnc-CDR1-3 ENSG00000230668 SOX3
GH0XJ140763 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE CraniofacialAtlas 254.9 +55.9 55859 3.6 CTCF TRIM22 ZNF341 SMC3 RAD21 SP2 TAF1 NFIB ZFP69B EZH2 LINC00632 RF00017-8772 lnc-SPANXB1-6 CDR1 SOX3
GH0XJ140783 Promoter 0.3 EPDnew 250.2 +73.7 73665 0.1 CDR1 LINC00632 RF00017-8772 lnc-SPANXB1-6 SOX3
GH0XJ140725 Enhancer 0.6 Ensembl 0.4 +15.6 15639 0.4 ZBTB10 NONO MLLT1 ZNF48 ZNF202 ZSCAN4 ZNF175 ZNF707 ZNF777 ZNF274 lnc-CDR1-1 RF00017-8771 lnc-CDR1-3 lnc-SPANXB1-7 ENSG00000230668 LINC00632 CDR1 SOX3
GH0XJ140762 Enhancer 0.7 Ensembl ENCODE 0.2 +52.7 52739 0.6 CTCF TRIM22 RAD21 SMC3 JUND ZZZ3 ZNF366 RUNX3 ZNF654 RF00017-8772 lnc-SPANXB1-6 CDR1 LINC00632 SOX3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00632 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00632 Gene

Latest Assembly
chrX:140,709,562-140,793,215
(GRCh38/hg38)
Size:
83,654 bases
Orientation:
Plus strand

Previous Assembly
chrX:139,791,924-139,854,842
(GRCh37/hg19 by Entrez Gene)
Size:
62,919 bases
Orientation:
Plus strand

chrX:139,791,932-139,854,844
(GRCh37/hg19 by Ensembl)
Size:
62,913 bases
Orientation:
Plus strand

Genomic View for LINC00632 Gene

Genes around LINC00632 on UCSC Golden Path with GeneCards custom track
LINC00632 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00632 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00632 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00632 Gene

Proteins for LINC00632 Gene

Post-translational modifications for LINC00632 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00632 Gene

Domains & Families for LINC00632 Gene

Gene Families for LINC00632 Gene

genes like me logo Genes that share domains with LINC00632: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00632 Gene

Function for LINC00632 Gene

Phenotypes From GWAS Catalog for LINC00632 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LINC00632 Gene

Localization for LINC00632 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC00632 gene
Compartment Confidence
nucleus 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00632 Gene

Pathways & Interactions for LINC00632 Gene

PathCards logo

SuperPathways for LINC00632 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00632 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00632 Gene

Drugs & Compounds for LINC00632 Gene

No Compound Related Data Available

Transcripts for LINC00632 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00632 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E7FE_9606 lncRNA 1398 4

RefSeq: NR_028344,

LncBook: HSALNT0286909,

LNCipedia: LINC00632:4,

NONCODE: NONHSAT223069.1,

URS000075AD6F_9606 lncRNA 749 3

RefSeq: NR_028345,

LncBook: HSALNT0286908,

LNCipedia: LINC00632:3,

URS000075E865_9606 lncRNA 770 2

RefSeq: NR_104228,

LNCipedia: LINC00632:13,

URS0000EEC737_9606 lncRNA 21234 1

Ensembl: ENST00000648200 (view in UCSC) ,

URS0000EECD6A_9606 lncRNA 8733 1

Ensembl: ENST00000607004 (view in UCSC) ,

LINC00632 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00632 Gene

9 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00632 Gene

No ASD Table

Relevant External Links for LINC00632 Gene

GeneLoc Exon Structure for
LINC00632

Expression for LINC00632 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00632 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00632 Gene

This gene is overexpressed in Pituitary (x13.7), Brain - Cerebellar Hemisphere (x5.7), and Brain - Cerebellum (x5.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00632

genes like me logo Genes that share expression patterns with LINC00632: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00632 Gene

Orthologs for LINC00632 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC00632 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LINC00632 31
  • 97 (a)
OneToOne
Species where no ortholog for LINC00632 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC00632 Gene

ENSEMBL:
Gene Tree for LINC00632 (if available)
TreeFam:
Gene Tree for LINC00632 (if available)

Paralogs for LINC00632 Gene

No data available for Paralogs for LINC00632 Gene

Variants for LINC00632 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00632 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00632 Gene

Variant ID Type Subtype PubMed ID
dgv2494e212 CNV loss 25503493
dgv2495e212 CNV loss 25503493
dgv4305n106 CNV duplication 24896259
esv2740529 CNV deletion 23290073
esv2740530 CNV deletion 23290073
esv3309908 CNV mobile element insertion 20981092
esv3433313 CNV insertion 20981092
esv3445596 CNV insertion 20981092
esv3574839 CNV loss 25503493
esv3574840 CNV loss 25503493
esv3574841 CNV loss 25503493
esv6542 CNV loss 19470904
nsv1078135 CNV duplication 25765185
nsv1147187 CNV duplication 26484159
nsv472816 CNV novel sequence insertion 20440878
nsv508804 CNV insertion 20534489
nsv523880 CNV gain 19592680

Variation tolerance for LINC00632 Gene

Gene Damage Index Score: 0.29; 6.37% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC00632 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00632

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC00632 Gene

Disorders for LINC00632 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00632 Gene - From: COP

Disorder Aliases PubMed IDs
panhypopituitarism, x-linked
  • phpx
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00632

genes like me logo Genes that share disorders with LINC00632: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00632 Gene

Publications for LINC00632 Gene

  1. ciRS-7 exonic sequence is embedded in a long non-coding RNA locus. (PMID: 29236709) Barrett SP … Salzman J (PLoS genetics 2017) 2 3
  2. Non-coding RNAs and gastric cancer. (PMID: 24833871) Li PF … Guo JM (World journal of gastroenterology 2014) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

Products for LINC00632 Gene

Sources for LINC00632 Gene