Aliases for LINC00628 Gene

Subcategory (RNA class) for LINC00628 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC00628 Gene

  • Long Intergenic Non-Protein Coding RNA 628 2 3 5
  • LINC00628 2 170
  • NONHSAG004026 94
  • HSALNG0009871 169

External Ids for LINC00628 Gene

Previous GeneCards Identifiers for LINC00628 Gene

  • GC01M204338

Summaries for LINC00628 Gene

GeneCards Summary for LINC00628 Gene

LINC00628 (Long Intergenic Non-Protein Coding RNA 628) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00628 include Gastric Cancer and Breast Cancer.

Additional gene information for LINC00628 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00628 Gene

Genomics for LINC00628 Gene

GeneHancer (GH) Regulatory Elements for LINC00628 Gene

Promoters and enhancers for LINC00628 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J204366 Enhancer 0.6 Ensembl dbSUPER 750.6 +1.2 1207 2.4 ZFHX2 ZMYM3 KLF1 LINC00628 GOLT1A ENSG00000231691 PPP1R15B ETNK2 ERLNC1 PLEKHA6 lnc-MDM4-10 lnc-PLEKHA6-1
GH01J204361 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +6.7 6724 3.9 ZBTB40 CTCF SMARCE1 CC2D1A ETV6 ELF1 L3MBTL2 MAX RAD21 MNT lnc-MDM4-10 ZC3H11A MDM4 PPP1R15B ENSG00000231691 SNRPE GOLT1A ETNK2 ERLNC1 PLEKHA6
GH01J204375 Enhancer 0.2 Ensembl 0.4 -6.0 -5993 0.8 PLEKHA6 PPP1R15B ENSG00000231691 ETNK2 ERLNC1 GOLT1A lnc-PLEKHA6-1 LINC00628
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00628 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00628 Gene

Genomic Locations for LINC00628 Gene
chr1:204,368,429-204,369,808
(GRCh38/hg38)
Size:
1,380 bases
Orientation:
Minus strand
chr1:204,337,558-204,338,847
(GRCh37/hg19)
Size:
1,290 bases
Orientation:
Minus strand

Genomic View for LINC00628 Gene

Genes around LINC00628 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00628 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00628 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00628 Gene

Proteins for LINC00628 Gene

Post-translational modifications for LINC00628 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00628 Gene

Domains & Families for LINC00628 Gene

Gene Families for LINC00628 Gene

genes like me logo Genes that share domains with LINC00628: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00628 Gene

Function for LINC00628 Gene

Phenotypes From GWAS Catalog for LINC00628 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00628 Gene

Localization for LINC00628 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00628 Gene

Pathways & Interactions for LINC00628 Gene

PathCards logo

SuperPathways for LINC00628 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00628 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00628 Gene

Drugs & Compounds for LINC00628 Gene

No Compound Related Data Available

Transcripts for LINC00628 Gene

mRNA/cDNA for LINC00628 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) LNCipedia transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00628 Gene

No ASD Table

Relevant External Links for LINC00628 Gene

GeneLoc Exon Structure for
LINC00628
ECgene alternative splicing isoforms for
LINC00628

Expression for LINC00628 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00628 Gene:

LINC00628

SOURCE GeneReport for Unigene cluster for LINC00628 Gene:

Hs.213144
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00628 Gene

Orthologs for LINC00628 Gene

Evolution for LINC00628 Gene

ENSEMBL:
Gene Tree for LINC00628 (if available)
TreeFam:
Gene Tree for LINC00628 (if available)

No data available for Orthologs for LINC00628 Gene

Paralogs for LINC00628 Gene

No data available for Paralogs for LINC00628 Gene

Variants for LINC00628 Gene

Sequence variations from dbSNP and Humsavar for LINC00628 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001322308 -- 204,371,691(-) G/A upstream_transcript_variant
rs1003466120 -- 204,368,554(-) G/A non_coding_transcript_variant
rs1003638664 -- 204,369,889(-) C/T upstream_transcript_variant
rs1007593984 -- 204,369,326(-) T/C non_coding_transcript_variant
rs1007924020 -- 204,368,063(-) T/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00628 Gene

Variant ID Type Subtype PubMed ID
nsv818778 CNV gain 17921354

Additional Variant Information for LINC00628 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00628

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00628 Gene

Disorders for LINC00628 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC00628 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00628

genes like me logo Genes that share disorders with LINC00628: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00628 Gene

Publications for LINC00628 Gene

  1. LncRNA LINC00628 overexpression inhibits the growth and invasion through regulating PI3K/Akt signaling pathway in osteosarcoma. (PMID: 30280767) He R … Yang L (European review for medical and pharmacological sciences 2018) 2 3 56
  2. Long non-coding RNA LINC00628 suppresses the growth and metastasis and promotes cell apoptosis in breast cancer. (PMID: 28165561) Chen DQ … Liu XY (European review for medical and pharmacological sciences 2017) 2 3 56
  3. Long non-coding RNA LINC00628 functions as a gastric cancer suppressor via long-range modulating the expression of cell cycle related genes. (PMID: 27272474) Zhang ZZ … Zhang ZG (Scientific reports 2016) 2 3 56
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC00628 Gene

Sources for LINC00628 Gene