Aliases for LINC00626 Gene

Subcategory (RNA class) for LINC00626 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00626 Gene

  • Long Intergenic Non-Protein Coding RNA 626 2 3 5
  • LINC00626 2 168
  • HSALNG0008299 167
  • NONHSAG003402 92

External Ids for LINC00626 Gene

Summaries for LINC00626 Gene

GeneCards Summary for LINC00626 Gene

LINC00626 (Long Intergenic Non-Protein Coding RNA 626) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00626 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00626 Gene

Genomics for LINC00626 Gene

GeneHancer (GH) Regulatory Elements for LINC00626 Gene

Promoters and enhancers for LINC00626 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J168783 Enhancer 0.7 Ensembl ENCODE 500.7 0.0 -15 1.8 EP300 ZNF316 CEBPB GATA3 PRDM1 STAT1 MAFG TCF7L2 ZNF664 MAFK LINC00626 lnc-DPT-2 DPT ATP1B1 ENSG00000237707 ENSG00000235736 ENSG00000285622
GH01J168782 Enhancer 0.5 ENCODE 500.7 -1.1 -1074 0.2 CUX1 EP300 CEBPB PRDM1 STAT1 TCF7L2 GATA3 CREB1 LINC00626 lnc-DPT-2 DPT ENSG00000235736 ENSG00000285622
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00626 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00626 Gene

Genomic Locations for LINC00626 Gene
chr1:168,784,012-168,792,888
(GRCh38/hg38)
Size:
8,877 bases
Orientation:
Plus strand
chr1:168,756,177-168,762,126
(GRCh37/hg19)
Size:
5,950 bases
Orientation:
Plus strand

Genomic View for LINC00626 Gene

Genes around LINC00626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00626 Gene

Proteins for LINC00626 Gene

Post-translational modifications for LINC00626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00626 Gene

Domains & Families for LINC00626 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00626 Gene

Function for LINC00626 Gene

Phenotypes From GWAS Catalog for LINC00626 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00626 Gene

Localization for LINC00626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00626 Gene

Pathways & Interactions for LINC00626 Gene

PathCards logo

SuperPathways for LINC00626 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00626 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00626 Gene

Drugs & Compounds for LINC00626 Gene

No Compound Related Data Available

Transcripts for LINC00626 Gene

mRNA/cDNA for LINC00626 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
5 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00626 Gene

No ASD Table

Relevant External Links for LINC00626 Gene

GeneLoc Exon Structure for
LINC00626

Expression for LINC00626 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00626 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00626 Gene

This gene is overexpressed in Kidney - Cortex (x15.5), Pituitary (x12.4), and Minor Salivary Gland (x5.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00626

SOURCE GeneReport for Unigene cluster for LINC00626 Gene:

Hs.250624
genes like me logo Genes that share expression patterns with LINC00626: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00626 Gene

Orthologs for LINC00626 Gene

Evolution for LINC00626 Gene

ENSEMBL:
Gene Tree for LINC00626 (if available)
TreeFam:
Gene Tree for LINC00626 (if available)

No data available for Orthologs for LINC00626 Gene

Paralogs for LINC00626 Gene

No data available for Paralogs for LINC00626 Gene

Variants for LINC00626 Gene

Additional dbSNP identifiers (rs#s) for LINC00626 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00626 Gene

Variant ID Type Subtype PubMed ID
nsv1078878 OTHER inversion 25765185
nsv831847 CNV gain 17160897

Additional Variant Information for LINC00626 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00626

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00626 Gene

Disorders for LINC00626 Gene

Additional Disease Information for LINC00626

No disorders were found for LINC00626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00626 Gene

Publications for LINC00626 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00626 Gene

Sources for LINC00626 Gene