Aliases for LINC00623 Gene

Subcategory (RNA class) for LINC00623 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC00623 Gene

  • Long Intergenic Non-Protein Coding RNA 623 2 3 5
  • LINC00623 2 168
  • HSALNG0006924 167
  • NONHSAG002669 92
  • HSALNG0006640 167
  • CH17-118O6.2 3

External Ids for LINC00623 Gene

Previous GeneCards Identifiers for LINC00623 Gene

  • GC01M144276

Summaries for LINC00623 Gene

GeneCards Summary for LINC00623 Gene

LINC00623 (Long Intergenic Non-Protein Coding RNA 623) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC00623 include Ovarian Cancer.

Additional gene information for LINC00623 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00623 Gene

Genomics for LINC00623 Gene

GeneHancer (GH) Regulatory Elements for LINC00623 Gene

Promoters and enhancers for LINC00623 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J120911 Promoter 0.9 Ensembl 500.7 +1.4 1363 5.2 ZNF217 ZBTB26 CTBP1 HCFC1 BCL11A KLF9 WT1 SP2 ZNF263 SAP130 ENSG00000281741 LINC00623 LOC100996720-001
GH01J120302 Enhancer 1.1 Ensembl ENCODE dbSUPER 4.4 -606.3 -606338 7.8 ZIC2 GATAD2B CTBP1 NCOR1 ESRRA EHMT2 FOXA1 HDAC2 DPF2 FOXK2 piR-45586-001 LINC00623 piR-61532-016 ENSG00000223804 ENSG00000274642 LOC100996723
GH01J120292 Enhancer 0.2 dbSUPER 4.1 -619.4 -619390 1.3 piR-50852-006 LINC00623 piR-45586-001 ENSG00000223804 ENSG00000274642 LOC100996723
GH01J120941 Promoter 0.5 Ensembl 0.3 +30.3 30263 2.6 MEIS2 PKNOX1 RNVU1-4 lnc-PPIAL4A-2 LINC00623
GH01J120909 Enhancer 0.2 Ensembl 0.7 -2.2 -2238 0.8 LINC00623 piR-60985-007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00623 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00623 Gene

Genomic Locations for LINC00623 Gene
chr1:120,912,238-121,009,291
(GRCh38/hg38)
Size:
97,054 bases
Orientation:
Plus strand
chr1:144,275,918-144,341,756
(GRCh37/hg19)
Size:
65,839 bases
Orientation:
Minus strand

Genomic View for LINC00623 Gene

Genes around LINC00623 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00623 Gene

Proteins for LINC00623 Gene

Post-translational modifications for LINC00623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00623 Gene

Domains & Families for LINC00623 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00623 Gene

Function for LINC00623 Gene

Phenotypes From GWAS Catalog for LINC00623 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00623 Gene

Localization for LINC00623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00623 Gene

Pathways & Interactions for LINC00623 Gene

PathCards logo

SuperPathways for LINC00623 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC00623 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00623 Gene

Drugs & Compounds for LINC00623 Gene

No Compound Related Data Available

Transcripts for LINC00623 Gene

mRNA/cDNA for LINC00623 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00623 Gene

No ASD Table

Relevant External Links for LINC00623 Gene

GeneLoc Exon Structure for
LINC00623

Expression for LINC00623 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00623 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00623 Gene

This gene is overexpressed in Whole Blood (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00623

SOURCE GeneReport for Unigene cluster for LINC00623 Gene:

Hs.456578
genes like me logo Genes that share expression patterns with LINC00623: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00623 Gene

Orthologs for LINC00623 Gene

Evolution for LINC00623 Gene

ENSEMBL:
Gene Tree for LINC00623 (if available)
TreeFam:
Gene Tree for LINC00623 (if available)

No data available for Orthologs for LINC00623 Gene

Paralogs for LINC00623 Gene

No data available for Paralogs for LINC00623 Gene

Variants for LINC00623 Gene

Additional dbSNP identifiers (rs#s) for LINC00623 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00623 Gene

Variant ID Type Subtype PubMed ID
dgv96e212 CNV loss 25503493
esv3587388 CNV loss 21293372
nsv1112554 CNV deletion 24896259
nsv1126206 CNV deletion 24896259
nsv1130964 CNV deletion 24896259
nsv1130966 CNV deletion 24896259
nsv1136093 CNV deletion 24896259
nsv1143461 CNV deletion 24896259
nsv524681 CNV gain 19592680
nsv547683 CNV loss 21841781
nsv7980 CNV loss 18304495
nsv8313 CNV loss 18304495
nsv946228 CNV duplication 23825009

Additional Variant Information for LINC00623 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00623

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00623 Gene

Disorders for LINC00623 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC00623 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
ovarian cancer
  • ovarian cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC00623

genes like me logo Genes that share disorders with LINC00623: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC00623 Gene

Publications for LINC00623 Gene

  1. Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells. (PMID: 28128423) Yan H … Feng FZ (Genetics and molecular research : GMR 2017) 2 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC00623 Gene

Sources for LINC00623 Gene