Aliases for LINC00619 Gene

Data sources for LINC00619 Gene:

Subcategory (RNA class) for LINC00619 Gene

lncRNA

Aliases for LINC00619 Gene

External Ids for LINC00619 Gene

Previous HGNC Symbols for LINC00619 Gene

  • C10orf136

Previous GeneCards Identifiers for LINC00619 Gene

  • GC10P044341
  • GC10P043845

Summaries for LINC00619 Gene

GeneCards Summary for LINC00619 Gene

LINC00619 (Long Intergenic Non-Protein Coding RNA 619) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00619 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00619 Gene

Genomics for LINC00619 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00619 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043778 Promoter/Enhancer 0.5 EPDnew Ensembl 250.7 +0.2 154 1 LINC00619 LOC105378275 LINC00840 LINC02658 LINC02659 HSALNG0077589 LOC107984189 ZNF32
GH10J043780 Enhancer 0.2 Ensembl 250.7 +1.7 1655 0.4 LINC00619 LOC105378275 LINC00840 LINC02658 HSALNG0077589 LOC107984189 ZNF32
GH10J043781 Enhancer 0.7 Ensembl ENCODE 0.7 +3.4 3355 1.8 FEZF1 ZIC2 MYC MAX GLIS1 RCOR1 EGR2 DPF2 ZFHX2 HSALNG0077589 LINC00619 LOC105378275 LINC00840 HSALNG0077588 LOC107984189 ZNF32
GH10J043793 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.4 +15.3 15313 1.3 GABPA RXRA SP1 CEBPB NR2C2 NR2F2 HNRNPA3P1 LOC105378275 LINC00619 LINC00840 HSALNG0077588 LOC107984189 ZNF32
GH10J043845 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +67.8 67755 1.4 RAD21 EED NR2F2 LINC00840 CXCL12 ENSG00000229116 LINC02659 HSALNG0077592-001 piR-33056-002 LOC107984189 LINC00619
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00619 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00619 Gene

Latest Assembly
chr10:43,778,946-43,901,004
(GRCh38/hg38)
Size:
122,059 bases
Orientation:
Plus strand

Previous Assembly
chr10:44,340,754-44,346,070
(GRCh37/hg19 by Entrez Gene)
Size:
5,317 bases
Orientation:
Plus strand

Genomic View for LINC00619 Gene

Genes around LINC00619 on UCSC Golden Path with GeneCards custom track
LINC00619 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00619 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00619 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00619 Gene

Proteins for LINC00619 Gene

Post-translational modifications for LINC00619 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00619 Gene

Domains & Families for LINC00619 Gene

Gene Families for LINC00619 Gene

genes like me logo Genes that share domains with LINC00619: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00619 Gene

Function for LINC00619 Gene

Phenotypes From GWAS Catalog for LINC00619 Gene

Phenotypes for LINC00619 Gene

genes like me logo Genes that share phenotypes with LINC00619: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00619 Gene

Localization for LINC00619 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00619 Gene

Pathways & Interactions for LINC00619 Gene

PathCards logo

SuperPathways for LINC00619 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00619 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00619 Gene

Drugs & Compounds for LINC00619 Gene

No Compound Related Data Available

Transcripts for LINC00619 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00619 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000006A9A7_9606 lncRNA 1979 5

RefSeq: NR_038268,

Ensembl: ENST00000431737 (view in UCSC) ,

LncBook: HSALNT0161951,

LNCipedia: lnc-ZNF485-68:8,

NONCODE: NONHSAT012998.2,

URS0000DB97B2_9606 lncRNA 2203 1

Ensembl: ENST00000649239 (view in UCSC) ,

URS0000EEF90E_9606 lncRNA 1895 1

Ensembl: ENST00000659335 (view in UCSC) ,

URS0000EEC684_9606 lncRNA 1797 1

Ensembl: ENST00000665279 (view in UCSC) ,

URS0000EECE2A_9606 lncRNA 1630 1

Ensembl: ENST00000653073 (view in UCSC) ,

LINC00619 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00619 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00619 Gene

No ASD Table

Relevant External Links for LINC00619 Gene

GeneLoc Exon Structure for
LINC00619

Expression for LINC00619 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00619 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00619

SOURCE GeneReport for Unigene cluster for LINC00619 Gene:

Hs.351856
genes like me logo Genes that share expression patterns with LINC00619: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00619 Gene

Orthologs for LINC00619 Gene

Evolution for LINC00619 Gene

ENSEMBL:
Gene Tree for LINC00619 (if available)
TreeFam:
Gene Tree for LINC00619 (if available)

No data available for Orthologs for LINC00619 Gene

Paralogs for LINC00619 Gene

No data available for Paralogs for LINC00619 Gene

Variants for LINC00619 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00619 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC00619 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00619

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00619 Gene

Disorders for LINC00619 Gene

Additional Disease Information for LINC00619

No disorders were found for LINC00619 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00619 Gene

Publications for LINC00619 Gene

  1. LINC00619 restricts gastric cancer progression by preventing microRNA-224-5p-mediated inhibition of OPCML. (PMID: 32359894) Fang X … Wei L (Archives of biochemistry and biophysics 2020) 3
  2. Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani NJ … WTCCC and the Cardiogenics Consortium (The New England journal of medicine 2007) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC00619 Gene

Sources for LINC00619 Gene