Free for academic non-profit institutions. Other users need a Commercial license

LINC00619 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 619

GCID:
GC10P043845
GIFtS:
15
Genes Participants
UDN Logo

Aliases for LINC00619 Gene

Subcategory (RNA class) for LINC00619 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00619 Gene

  • Long Intergenic Non-Protein Coding RNA 619 2 3 5
  • Chromosome 10 Open Reading Frame 136 2
  • BA168P8.1 3
  • C10orf136 3

External Ids for LINC00619 Gene

Previous HGNC Symbols for LINC00619 Gene

  • C10orf136

Previous GeneCards Identifiers for LINC00619 Gene

  • GC10P044341

Summaries for LINC00619 Gene

GeneCards Summary for LINC00619 Gene

LINC00619 (Long Intergenic Non-Protein Coding RNA 619) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00619 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00619 Gene

Genomics for LINC00619 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC00619 Gene

Promoters and enhancers for LINC00619 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10I043842 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 550.8 -1.6 -1569 2 ZFHX2 ATF4 FOS LINC00619 LOC105378277 ZNF487 HNRNPA3P1
GH10I043845 Enhancer 0.8 Ensembl ENCODE dbSUPER 550.8 +1.3 1346 1.5 RAD21 NR2F2 LINC00619 CXCL12 ENSG00000229116 LOC105378277 LINC00840
GH10I043867 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +22.8 22839 1.8 ELF3 SOX13 SAP130 JUN RARA TEAD3 FOSL2 FOS ZNF600 SOX5 LINC00619 LOC105378277 LINC00840 LINC00841
GH10I043815 Enhancer 0.9 Ensembl ENCODE 11.7 -28.6 -28612 2.5 MEIS2 ZNF664 POLR2A RCOR1 FOS BCLAF1 RUNX3 IKZF2 CHD2 ZNF687 LINC00619 LOC105378277 HNRNPA3P1 LOC105378275
GH10I043888 Enhancer 0.7 ENCODE dbSUPER 11.1 +43.4 43422 0.1 JUND CEBPB FOS EP300 LOC105378277 LINC00619 CXCL12 LINC00841 LINC00840
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00619 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00619 Gene

Genomic Locations for LINC00619 Gene
chr10:43,845,306-43,850,622
(GRCh38/hg38)
Size:
5,317 bases
Orientation:
Plus strand
chr10:44,340,754-44,346,070
(GRCh37/hg19)

Genomic View for LINC00619 Gene

Genes around LINC00619 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00619 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00619 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC00619 Gene

Proteins for LINC00619 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC00619 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00619 Gene

Domains & Families for LINC00619 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00619 Gene

Function for LINC00619 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC00619 Gene

Phenotypes for LINC00619 Gene

GenomeRNAi human phenotypes for LINC00619:
genes like me logo Genes that share phenotypes with LINC00619: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00619 Gene

Localization for LINC00619 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00619 Gene

Pathways & Interactions for LINC00619 Gene

SuperPathways for LINC00619 Gene

PathCards logo More details on SuperPathways for LINC00619
No Data Available

Interacting Proteins for LINC00619 Gene

Gene Ontology (GO) - Biological Process for LINC00619 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00619 Gene

Drugs & Compounds for LINC00619 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC00619 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC00619 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00619 Gene

Long intergenic non-protein coding RNA 619:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00619 Gene

No ASD Table

Relevant External Links for LINC00619 Gene

GeneLoc Exon Structure for
LINC00619
ECgene alternative splicing isoforms for
LINC00619

Expression for LINC00619 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00619 Gene

mRNA expression in normal human tissues for LINC00619 Gene
mRNA expression by GTEx for LINC00619 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00619 Gene:

LINC00619

SOURCE GeneReport for Unigene cluster for LINC00619 Gene:

Hs.351856
genes like me logo Genes that share expression patterns with LINC00619: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00619 Gene

Orthologs for LINC00619 Gene

Evolution for LINC00619 Gene

ENSEMBL:
Gene Tree for LINC00619 (if available)
TreeFam:
Gene Tree for LINC00619 (if available)

No data available for Orthologs for LINC00619 Gene

Paralogs for LINC00619 Gene

No data available for Paralogs for LINC00619 Gene

Variants for LINC00619 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC00619 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1002089618 -- 43,846,260(+) T/C intron_variant
rs1002409810 -- 43,846,948(+) G/T intron_variant
rs1002524457 -- 43,850,613(+) A/G non_coding_transcript_variant
rs1002756786 -- 43,850,881(+) A/G/T downstream_transcript_variant
rs1002780321 -- 43,845,822(+) T/C intron_variant

Additional Variant Information for LINC00619 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00619

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC00619 Gene

Disorders for LINC00619 Gene

Additional Disease Information for LINC00619

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC00619 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00619 Gene

Publications for LINC00619 Gene

  1. Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani NJ … WTCCC and the Cardiogenics Consortium (The New England journal of medicine 2007) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC00619 Gene

Sources for LINC00619 Gene

Content
Loading form....