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Aliases for LINC00612 Gene

Subcategory (RNA class) for LINC00612 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC00612 Gene

  • Long Intergenic Non-Protein Coding RNA 612 2 3 5
  • C12orf33 3 4
  • Chromosome 12 Open Reading Frame 33 2

External Ids for LINC00612 Gene

Previous HGNC Symbols for LINC00612 Gene

  • C12orf33

Previous GeneCards Identifiers for LINC00612 Gene

  • GC12M009209

Summaries for LINC00612 Gene

GeneCards Summary for LINC00612 Gene

LINC00612 (Long Intergenic Non-Protein Coding RNA 612) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00612 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00612 Gene

Genomics for LINC00612 Gene

GeneHancer (GH) Regulatory Elements for LINC00612 Gene

Promoters and enhancers for LINC00612 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I009063 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 +0.3 318 2.3 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 GLIS2 PAF1 RXRA A2M-AS1 LINC00612 A2M KRT17P8 BTG1P1 VDAC2P2
GH12I008947 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.3 +112.9 112857 8.7 CLOCK SMAD1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 YY1 POLR2B M6PR KLRG1 LOC642846 LINC00612 PHC1 DDX12P ENSG00000213443 FOXJ2 ENSG00000257105
GH12I008079 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 19.2 +983.4 983438 3.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 YY1 NECAP1 ENSG00000279865 ENSG00000284697 FOXJ2 ENSG00000256967 M6PR POU5F1P3 LINC00612 C1RL-AS1 HADHAP2
GH12I009646 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 10 -586.7 -586663 10 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 IRF4 SLC30A9 ZNF207 ZNF143 LOC105369728 CLEC2D LOC374443 DDX12P KLRB1 CLECL1 CLEC7A M6PR CLEC12A LOC642846
GH12I009701 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -637.5 -637478 2.2 ZFP64 ZC3H11A EBF1 ZNF781 ZNF518A ZNF697 ZNF555 ZFHX2 RUNX3 EGR2 LINC02390 CLECL1 PHC1 CLEC2D KLRA1P LOC642846 KLRB1 DDX12P LINC00612 ENSG00000213443
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC00612 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00612 Gene

Genomic Locations for LINC00612 Gene
chr12:9,055,586-9,065,070
(GRCh38/hg38)
Size:
9,485 bases
Orientation:
Minus strand
chr12:9,208,182-9,217,666
(GRCh37/hg19)

Genomic View for LINC00612 Gene

Genes around LINC00612 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00612 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00612 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00612 Gene

Proteins for LINC00612 Gene

  • Protein details for LINC00612 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6U2-CL033_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC00612
    Protein Accession:
    Q8N6U2
    Secondary Accessions:
    • B3KW01

    Protein attributes for LINC00612 Gene

    Size:
    182 amino acids
    Molecular mass:
    18370 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC00612 Gene

Post-translational modifications for LINC00612 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00612 Gene

Domains & Families for LINC00612 Gene

Protein Domains for LINC00612 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC00612: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00612 Gene

Function for LINC00612 Gene

Phenotypes From GWAS Catalog for LINC00612 Gene

Phenotypes for LINC00612 Gene

GenomeRNAi human phenotypes for LINC00612:
genes like me logo Genes that share phenotypes with LINC00612: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00612 Gene

Localization for LINC00612 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00612 Gene

Pathways & Interactions for LINC00612 Gene

SuperPathways for LINC00612 Gene

No Data Available

Interacting Proteins for LINC00612 Gene

Selected Interacting proteins: Q8N6U2-CL033_HUMAN for LINC00612 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for LINC00612 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00612 Gene

Drugs & Compounds for LINC00612 Gene

No Compound Related Data Available

Transcripts for LINC00612 Gene

mRNA/cDNA for LINC00612 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC00612 Gene

Long intergenic non-protein coding RNA 612:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00612 Gene

No ASD Table

Relevant External Links for LINC00612 Gene

GeneLoc Exon Structure for
LINC00612
ECgene alternative splicing isoforms for
LINC00612

Expression for LINC00612 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00612 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC00612 Gene:

LINC00612

SOURCE GeneReport for Unigene cluster for LINC00612 Gene:

Hs.408739
genes like me logo Genes that share expression patterns with LINC00612: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00612 Gene

Orthologs for LINC00612 Gene

Evolution for LINC00612 Gene

ENSEMBL:
Gene Tree for LINC00612 (if available)
TreeFam:
Gene Tree for LINC00612 (if available)

No data available for Orthologs for LINC00612 Gene

Paralogs for LINC00612 Gene

No data available for Paralogs for LINC00612 Gene

Variants for LINC00612 Gene

Sequence variations from dbSNP and Humsavar for LINC00612 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000212841 -- 9,066,247(-) T/C upstream_transcript_variant
rs1000476709 -- 9,066,387(-) G/C upstream_transcript_variant
rs1000787335 -- 9,060,274(-) G/A intron_variant
rs1000922028 -- 9,062,912(-) G/T intron_variant
rs1000974055 -- 9,062,637(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00612 Gene

Variant ID Type Subtype PubMed ID
nsv1051530 CNV gain 25217958
nsv832327 CNV loss 17160897

Additional Variant Information for LINC00612 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00612

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00612 Gene

Disorders for LINC00612 Gene

Additional Disease Information for LINC00612

No disorders were found for LINC00612 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00612 Gene

Publications for LINC00612 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58

Products for LINC00612 Gene

Sources for LINC00612 Gene

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