Aliases for LINC00608 Gene

Data sources for LINC00608 Gene:

RNA type for LINC00608 Gene

lncRNA

Aliases for LINC00608 Gene

External Ids for LINC00608 Gene

Previous GeneCards Identifiers for LINC00608 Gene

  • GC02P219843

Summaries for LINC00608 Gene

GeneCards Summary for LINC00608 Gene

LINC00608 (Long Intergenic Non-Protein Coding RNA 608) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00608 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00608 Gene

Genomics for LINC00608 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00608 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J218975 Enhancer 0.5 ENCODE 250.7 +1.3 1348 0.8 MAFF ZNF316 MAFK PKNOX1 MAFG CTCF ZNF121 EMSY LINC00608 FEV CDK5R2
GH02J218976 Promoter 0.3 EPDnew 250.7 +2.0 2019 0.1 LINC00608 FEV CDK5R2
GH02J218908 Promoter/Enhancer 1.8 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.8 -64.6 -64610 2.3 BCLAF1 SP1 MYC ZNF600 ZNF580 ZNF592 ZMYM3 KLF9 POLR2A ZNF10 HSALNG0022314-001 HSALNG0022314-002 lnc-WNT10A-4 STK36 ZNF142 CNOT9 AAMP OBSL1 CDK5R2 ENSG00000235024
GH02J219121 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 10.7 +151.0 150993 7.5 NCOR1 IKZF1 KLF9 CEBPA ATF3 JUND NFIC HES1 BHLHE40 HOMEZ lnc-IHH-1 SLC23A3 NHEJ1 IHH LOC100129175 MIR375 CRYBA2 FEV LINC00608 RETREG2
GH02J218743 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.1 -227.8 -227845 10 MYC IKZF1 SSRP1 ZNF592 CEBPA ZIC2 CHD4 BCL11A KLF11 ZFP64 HSALNG0022293 lnc-RNF25-3 CYP27A1 PLCD4 TTLL4 PRKAG3 WNT6 RNF25 STK36 LINC00608
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00608 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00608 Gene

Latest Assembly
chr2:218,974,246-218,989,940
(GRCh38/hg38)
Size:
15,695 bases
Orientation:
Plus strand

Previous Assembly
chr2:219,841,006-219,842,644
(GRCh37/hg19 by Entrez Gene)
Size:
1,639 bases
Orientation:
Plus strand

chr2:219,840,321-219,844,382
(GRCh37/hg19 by Ensembl)
Size:
4,062 bases
Orientation:
Plus strand

Genomic View for LINC00608 Gene

Genes around LINC00608 on UCSC Golden Path with GeneCards custom track
LINC00608 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC00608 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00608 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00608 Gene

Proteins for LINC00608 Gene

Post-translational modifications for LINC00608 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00608 Gene

Domains & Families for LINC00608 Gene

Gene Families for LINC00608 Gene

genes like me logo Genes that share domains with LINC00608: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00608 Gene

Function for LINC00608 Gene

Phenotypes From GWAS Catalog for LINC00608 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00608 Gene

Localization for LINC00608 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00608 Gene

Pathways & Interactions for LINC00608 Gene

PathCards logo

SuperPathways for LINC00608 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00608 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00608 Gene

Drugs & Compounds for LINC00608 Gene

No Compound Related Data Available

Transcripts for LINC00608 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00608 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000566C0E_9606 lncRNA 2820 4

Ensembl: ENST00000432733 (view in UCSC) ,

LncBook: HSALNT0047389,

LNCipedia: LINC00608:12,

NONCODE: NONHSAT076971.2,

URS0000811C36_9606 lncRNA 513 4

Ensembl: ENST00000628185 (view in UCSC) ,

LncBook: HSALNT0047394,

LNCipedia: LINC00608:17,

NONCODE: NONHSAT183576.1,

URS0000811870_9606 lncRNA 435 4

Ensembl: ENST00000626251 (view in UCSC) ,

LncBook: HSALNT0047392,

LNCipedia: LINC00608:16,

NONCODE: NONHSAT183575.1,

URS00005DC248_9606 lncRNA 415 4

Ensembl: ENST00000598002 (view in UCSC) ,

LncBook: HSALNT0047385,

LNCipedia: LINC00608:7,

NONCODE: NONHSAT076968.2,

URS000041516D_9606 lncRNA 262 4

Ensembl: ENST00000600415 (view in UCSC) ,

LncBook: HSALNT0047380,

LNCipedia: LINC00608:3,

NONCODE: NONHSAT076964.2,

LINC00608 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00608 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00608 Gene

No ASD Table

Relevant External Links for LINC00608 Gene

GeneLoc Exon Structure for
LINC00608

Expression for LINC00608 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00608 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00608 Gene

This gene is overexpressed in Testis (x52.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00608

SOURCE GeneReport for Unigene cluster for LINC00608 Gene:

Hs.420716
genes like me logo Genes that share expression patterns with LINC00608: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00608 Gene

Orthologs for LINC00608 Gene

Evolution for LINC00608 Gene

ENSEMBL:
Gene Tree for LINC00608 (if available)
TreeFam:
Gene Tree for LINC00608 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC00608

No data available for Orthologs for LINC00608 Gene

Paralogs for LINC00608 Gene

No data available for Paralogs for LINC00608 Gene

Variants for LINC00608 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC00608 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC00608 Gene

Variant ID Type Subtype PubMed ID
dgv7296n54 CNV loss 21841781
nsv3169 CNV deletion 18451855
nsv584491 CNV loss 21841781
nsv834542 CNV gain 17160897

Additional Variant Information for LINC00608 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00608
Leiden Open Variation Database (LOVD)
LINC00608

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00608 Gene

Disorders for LINC00608 Gene

Additional Disease Information for LINC00608

No disorders were found for LINC00608 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00608 Gene

Publications for LINC00608 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Genome-wide association study of antibody response to smallpox vaccine. (PMID: 22542470) Ovsyannikova IG … Poland GA (Vaccine 2012) 3

Products for LINC00608 Gene

Sources for LINC00608 Gene