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Aliases for LINC00608 Gene

Subcategory (RNA class) for LINC00608 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00608 Gene

  • Long Intergenic Non-Protein Coding RNA 608 2 3 5

External Ids for LINC00608 Gene

Previous GeneCards Identifiers for LINC00608 Gene

  • GC02P219843

Summaries for LINC00608 Gene

GeneCards Summary for LINC00608 Gene

LINC00608 (Long Intergenic Non-Protein Coding RNA 608) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00608 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00608 Gene

Genomics for LINC00608 Gene

GeneHancer (GH) Regulatory Elements for LINC00608 Gene

Promoters and enhancers for LINC00608 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J218975 Enhancer 0.5 ENCODE 600.7 +0.2 201 0.8 ZNF121 MAFK PKNOX1 ZNF316 MAFG CTCF EMSY LINC00608 FEV
GH02J218908 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -65.8 -65795 2.4 SP1 ZFX ELF3 NKRF POLR2A CEBPG RERE ZNF687 AHR TFE3 USP37 CNOT9 NHEJ1 BCS1L STK36 DNPEP ZNF142 AAMP OBSL1 SLC23A3
GH02J219121 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 10.7 +149.8 149846 7.5 ELF3 CBFA2T2 MLLT1 CEBPG RERE SP7 SP1 HNF1A PPARG SP5 GC02P219123 SLC23A3 NHEJ1 IHH MIR375 LOC100129175 CRYBA2 FEV LINC00608 RETREG2
GH02J218886 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.6 -89.0 -88993 0.5 SP1 NKRF ZNF687 RELA CREM MLLT1 IKZF1 IKZF2 ZNF143 TRIM22 WNT6 RNU6-642P PRKAG3 LINC00608 FEV CRYBA2 WNT10A CNOT9 LOC105373882
GH02J219110 Enhancer 1.1 ENCODE dbSUPER 10.8 +136.9 136889 3 ELF3 CEBPG RERE TFE3 SP1 HNF1A PPARG SP5 ZNF644 KAT8 IHH MIR375 LOC100129175 CRYBA2 FEV LINC00608 PTPRN NHEJ1 SLC23A3 ENSG00000235024
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00608 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00608 Gene

Genomic Locations for LINC00608 Gene
chr2:218,975,393-218,989,940
(GRCh38/hg38)
Size:
14,548 bases
Orientation:
Plus strand
chr2:219,840,321-219,844,382
(GRCh37/hg19)
Size:
4,062 bases
Orientation:
Plus strand

Genomic View for LINC00608 Gene

Genes around LINC00608 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00608 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00608 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00608 Gene

Proteins for LINC00608 Gene

Post-translational modifications for LINC00608 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00608 Gene

Domains & Families for LINC00608 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00608 Gene

Function for LINC00608 Gene

Phenotypes From GWAS Catalog for LINC00608 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00608 Gene

Localization for LINC00608 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00608 Gene

Pathways & Interactions for LINC00608 Gene

PathCards logo

SuperPathways for LINC00608 Gene

No Data Available

Interacting Proteins for LINC00608 Gene

Gene Ontology (GO) - Biological Process for LINC00608 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00608 Gene

Drugs & Compounds for LINC00608 Gene

No Compound Related Data Available

Transcripts for LINC00608 Gene

mRNA/cDNA for LINC00608 Gene

Unigene Clusters for LINC00608 Gene

Long intergenic non-protein coding RNA 608:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00608 Gene

No ASD Table

Relevant External Links for LINC00608 Gene

GeneLoc Exon Structure for
LINC00608
ECgene alternative splicing isoforms for
LINC00608

Expression for LINC00608 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00608 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00608 Gene

This gene is overexpressed in Testis (x52.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC00608 Gene:

LINC00608

SOURCE GeneReport for Unigene cluster for LINC00608 Gene:

Hs.420716
genes like me logo Genes that share expression patterns with LINC00608: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00608 Gene

Orthologs for LINC00608 Gene

Evolution for LINC00608 Gene

ENSEMBL:
Gene Tree for LINC00608 (if available)
TreeFam:
Gene Tree for LINC00608 (if available)

No data available for Orthologs for LINC00608 Gene

Paralogs for LINC00608 Gene

No data available for Paralogs for LINC00608 Gene

Variants for LINC00608 Gene

Sequence variations from dbSNP and Humsavar for LINC00608 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000436893 -- 218,975,042(+) G/C upstream_transcript_variant
rs1000660068 -- 218,976,448(+) C/A non_coding_transcript_variant
rs1000771678 -- 218,976,642(+) C/T non_coding_transcript_variant
rs1001372742 -- 218,977,974(+) T/G downstream_transcript_variant
rs1002449075 -- 218,977,913(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00608 Gene

Variant ID Type Subtype PubMed ID
dgv7296n54 CNV loss 21841781
nsv3169 CNV deletion 18451855
nsv584491 CNV loss 21841781
nsv834542 CNV gain 17160897

Additional Variant Information for LINC00608 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00608

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00608 Gene

Disorders for LINC00608 Gene

Additional Disease Information for LINC00608

No disorders were found for LINC00608 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00608 Gene

Publications for LINC00608 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Genome-wide association study of antibody response to smallpox vaccine. (PMID: 22542470) Ovsyannikova IG … Poland GA (Vaccine 2012) 3 58

Products for LINC00608 Gene

Sources for LINC00608 Gene

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