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Aliases for LINC00607 Gene

Subcategory (RNA class) for LINC00607 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC00607 Gene

  • Long Intergenic Non-Protein Coding RNA 607 2 3 5

External Ids for LINC00607 Gene

Previous GeneCards Identifiers for LINC00607 Gene

  • GC02M216478

Summaries for LINC00607 Gene

GeneCards Summary for LINC00607 Gene

LINC00607 (Long Intergenic Non-Protein Coding RNA 607) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC00607 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC00607 Gene

Genomics for LINC00607 Gene

GeneHancer (GH) Regulatory Elements for LINC00607 Gene

Promoters and enhancers for LINC00607 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J215842 Enhancer 1 Ensembl ENCODE dbSUPER 650.7 +0.2 249 2.2 JUND POLR2A JUN MAFG NFE2 FOSL2 FOS MYC LINC00607 ENSG00000216721
GH02J215830 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.7 +11.0 11037 5.4 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 ZNF766 ATIC LINC00607 ENSG00000216721
GH02J215826 Enhancer 1.1 Ensembl ENCODE 5.1 +15.6 15593 3 FOXA2 ZFP64 ARID4B ETS1 YY1 ZNF143 RXRA NFYC REST PPARG LINC00607 ENSG00000216721
GH02J215611 Enhancer 1 Ensembl ENCODE 4.9 +231.7 231729 0.8 FOXA2 BATF RAD21 THRB RARA ETS1 ZNF614 IKZF2 KAT8 ZNF217 LINC00607 ENSG00000227981 GC02M215662 LOC102724861
GH02J215811 Enhancer 0.9 Ensembl ENCODE 5.2 +31.8 31835 1 SMAD1 BACH1 BMI1 EED ZNF207 ZSCAN29 ETV6 BCLAF1 IKZF2 RUNX3 LINC00607 ENSG00000216721
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00607 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC00607 Gene

Genomic Locations for LINC00607 Gene
chr2:215,611,563-215,843,722
(GRCh38/hg38)
Size:
232,160 bases
Orientation:
Minus strand
chr2:216,476,286-216,708,445
(GRCh37/hg19)
Size:
232,160 bases
Orientation:
Minus strand

Genomic View for LINC00607 Gene

Genes around LINC00607 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC00607 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00607 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00607 Gene

Proteins for LINC00607 Gene

Post-translational modifications for LINC00607 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00607 Gene

Domains & Families for LINC00607 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC00607 Gene

Function for LINC00607 Gene

Phenotypes From GWAS Catalog for LINC00607 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00607 Gene

Localization for LINC00607 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00607 Gene

Pathways & Interactions for LINC00607 Gene

SuperPathways for LINC00607 Gene

No Data Available

Interacting Proteins for LINC00607 Gene

Gene Ontology (GO) - Biological Process for LINC00607 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC00607 Gene

Drugs & Compounds for LINC00607 Gene

No Compound Related Data Available

Transcripts for LINC00607 Gene

mRNA/cDNA for LINC00607 Gene

(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Unigene Clusters for LINC00607 Gene

Long intergenic non-protein coding RNA 607:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00607 Gene

No ASD Table

Relevant External Links for LINC00607 Gene

GeneLoc Exon Structure for
LINC00607
ECgene alternative splicing isoforms for
LINC00607

Expression for LINC00607 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC00607 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00607 Gene

This gene is overexpressed in Artery - Coronary (x6.6).

NURSA nuclear receptor signaling pathways regulating expression of LINC00607 Gene:

LINC00607

SOURCE GeneReport for Unigene cluster for LINC00607 Gene:

Hs.655713
genes like me logo Genes that share expression patterns with LINC00607: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00607 Gene

Orthologs for LINC00607 Gene

Evolution for LINC00607 Gene

ENSEMBL:
Gene Tree for LINC00607 (if available)
TreeFam:
Gene Tree for LINC00607 (if available)

No data available for Orthologs for LINC00607 Gene

Paralogs for LINC00607 Gene

No data available for Paralogs for LINC00607 Gene

Variants for LINC00607 Gene

Sequence variations from dbSNP and Humsavar for LINC00607 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000005335 -- 215,759,429(-) A/G intron_variant
rs1000013633 -- 215,748,315(-) T/C intron_variant
rs1000015047 -- 215,755,041(-) C/G intron_variant
rs1000015344 -- 215,704,604(-) C/T intron_variant
rs1000030366 -- 215,711,998(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC00607 Gene

Variant ID Type Subtype PubMed ID
dgv4173n100 CNV loss 25217958
esv1000479 CNV deletion 20482838
esv1190327 CNV deletion 17803354
esv2508624 CNV insertion 19546169
esv2668382 CNV deletion 23128226
esv3338553 CNV insertion 20981092
esv3352464 CNV insertion 20981092
esv3361574 CNV insertion 20981092
esv3400236 CNV insertion 20981092
esv34084 CNV loss 18971310
esv34189 CNV loss 18971310
esv3444382 CNV insertion 20981092
esv3560974 CNV deletion 23714750
esv3594276 CNV loss 21293372
esv3594277 CNV loss 21293372
esv3594279 CNV loss 21293372
esv3594282 CNV loss 21293372
esv3893554 CNV loss 25118596
nsv1011860 CNV loss 25217958
nsv1012309 CNV loss 25217958
nsv1116826 CNV deletion 24896259
nsv1123429 CNV deletion 24896259
nsv3157 CNV deletion 18451855
nsv460094 CNV loss 19166990
nsv518768 CNV loss 19592680
nsv524960 CNV loss 19592680
nsv584451 CNV loss 21841781
nsv584452 CNV loss 21841781
nsv955104 CNV deletion 24416366
nsv961558 CNV duplication 23825009

Additional Variant Information for LINC00607 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00607

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC00607 Gene

Disorders for LINC00607 Gene

Additional Disease Information for LINC00607

No disorders were found for LINC00607 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00607 Gene

Publications for LINC00607 Gene

  1. Genome-wide association study of smoking behaviours among Bangladeshi adults. (PMID: 24665060) Argos M … Ahsan H (Journal of medical genetics 2014) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC00607 Gene

Sources for LINC00607 Gene

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