Aliases for LINC00607 Gene

Subcategory (RNA class) for LINC00607 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC00607 Gene

  • Long Intergenic Non-Protein Coding RNA 607 2 3 5
  • LINC00607 2 5 165
  • NONHSAG030459.2 91
  • HSALNG0022087 164
  • HSALNG0022088 164

External Ids for LINC00607 Gene

Previous GeneCards Identifiers for LINC00607 Gene

  • GC02M216478

Summaries for LINC00607 Gene

GeneCards Summary for LINC00607 Gene

LINC00607 (Long Intergenic Non-Protein Coding RNA 607) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC00607 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC00607 Gene

Genomics for LINC00607 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC00607 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J215826 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 606.3 +18.0 17953 10.8 CEBPG GATAD2A CTCF ATF7 TFE3 ZNF512 LEF1 SOX13 IKZF1 NFKBIZ LINC00607 MN297764 LINC01963 ATIC piR-61945-291 MREG FN1
GH02J215840 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +2.9 2854 12.6 CTCF BACH1 FOXA1 PRDM1 TCF12 IKZF2 TRIM22 HDAC1 PBX2 PKNOX1 LINC00607 MN297764 MREG FN1
GH02J215621 Promoter 0.6 EPDnew 600.1 +227.6 227630 0.1 ZNF316 MAFG EMSY ERF LINC00607 piR-61861-015 ENSG00000227981 LOC102724861 ENSG00000237525 FN1 MREG
GH02J215617 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas 5.3 +230.8 230817 6.3 CEBPG GATAD2A ZNF629 TFE3 LEF1 SOX13 IKZF1 RCOR2 JUND FOXA1 LINC01963 XRCC5 LINC00607 piR-61861-015 ENSG00000227981 LOC102724861 ENSG00000237525 FN1 MREG
GH02J215611 Enhancer 1 Ensembl ENCODE 5.2 +236.3 236254 3.8 GATAD2A RCOR2 RELA ZNF24 RXRB IKZF2 TRIM22 GABPA SOX13 CEBPB LINC00607 piR-61861-015 ENSG00000227981 LOC102724861 ENSG00000237525 FN1 MREG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC00607 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC00607 Gene

Genomic Locations for LINC00607 Gene
chr2:215,610,994-215,848,954
(GRCh38/hg38)
Size:
237,961 bases
Orientation:
Minus strand
chr2:216,476,286-216,708,445
(GRCh37/hg19)
Size:
232,160 bases
Orientation:
Minus strand

Genomic View for LINC00607 Gene

Genes around LINC00607 on UCSC Golden Path with GeneCards custom track
LINC00607 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC00607 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC00607 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC00607 Gene

Proteins for LINC00607 Gene

Post-translational modifications for LINC00607 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC00607 Gene

Domains & Families for LINC00607 Gene

Gene Families for LINC00607 Gene

genes like me logo Genes that share domains with LINC00607: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC00607 Gene

Function for LINC00607 Gene

Phenotypes From GWAS Catalog for LINC00607 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC00607 Gene

Localization for LINC00607 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC00607 Gene

Pathways & Interactions for LINC00607 Gene

PathCards logo

SuperPathways for LINC00607 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC00607 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC00607 Gene

Drugs & Compounds for LINC00607 Gene

No Compound Related Data Available

Transcripts for LINC00607 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC00607 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000126579_9606 lncRNA 3690 5

HGNC: 43944,

RefSeq: NR_037195,

Ensembl: ENST00000445174 (view in UCSC) ,

LNCipedia: LINC00607:3,

NONCODE: NONHSAT076770.2,

URS000014DA64_9606 lncRNA 581 4

Ensembl: ENST00000451392 (view in UCSC) ,

LncBook: HSALNT0046896,

LNCipedia: LINC00607:4,

NONCODE: NONHSAT076774.2,

URS00005E2BC5_9606 lncRNA 526 4

Ensembl: ENST00000419922 (view in UCSC) ,

LncBook: HSALNT0046894,

LNCipedia: LINC00607:7,

NONCODE: NONHSAT076772.2,

URS00005F2157_9606 lncRNA 2104 3

Ensembl: ENST00000423530 (view in UCSC) ,

LNCipedia: LINC00607:6,

NONCODE: NONHSAT076771.2,

URS0000EEE9C4_9606 lncRNA 3218 1

Ensembl: ENST00000662624 (view in UCSC) ,

LINC00607 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC00607 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC00607 Gene

No ASD Table

Relevant External Links for LINC00607 Gene

GeneLoc Exon Structure for
LINC00607

Expression for LINC00607 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC00607 Gene

mRNA differential expression in normal tissues according to GTEx for LINC00607 Gene

This gene is overexpressed in Artery - Coronary (x6.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC00607

SOURCE GeneReport for Unigene cluster for LINC00607 Gene:

Hs.655713
genes like me logo Genes that share expression patterns with LINC00607: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC00607 Gene

Orthologs for LINC00607 Gene

Evolution for LINC00607 Gene

ENSEMBL:
Gene Tree for LINC00607 (if available)
TreeFam:
Gene Tree for LINC00607 (if available)

No data available for Orthologs for LINC00607 Gene

Paralogs for LINC00607 Gene

No data available for Paralogs for LINC00607 Gene

Variants for LINC00607 Gene

Additional dbSNP identifiers (rs#s) for LINC00607 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC00607 Gene

Variant ID Type Subtype PubMed ID
dgv4173n100 CNV loss 25217958
esv1000479 CNV deletion 20482838
esv1190327 CNV deletion 17803354
esv2508624 CNV insertion 19546169
esv2668382 CNV deletion 23128226
esv3338553 CNV insertion 20981092
esv3352464 CNV insertion 20981092
esv3361574 CNV insertion 20981092
esv3400236 CNV insertion 20981092
esv34084 CNV loss 18971310
esv34189 CNV loss 18971310
esv3444382 CNV insertion 20981092
esv3560974 CNV deletion 23714750
esv3594276 CNV loss 21293372
esv3594277 CNV loss 21293372
esv3594279 CNV loss 21293372
esv3594282 CNV loss 21293372
esv3893554 CNV loss 25118596
nsv1011860 CNV loss 25217958
nsv1012309 CNV loss 25217958
nsv1116826 CNV deletion 24896259
nsv1123429 CNV deletion 24896259
nsv3157 CNV deletion 18451855
nsv460094 CNV loss 19166990
nsv518768 CNV loss 19592680
nsv524960 CNV loss 19592680
nsv584451 CNV loss 21841781
nsv584452 CNV loss 21841781
nsv955104 CNV deletion 24416366
nsv961558 CNV duplication 23825009

Additional Variant Information for LINC00607 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC00607

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC00607 Gene

Disorders for LINC00607 Gene

No disorders were found for LINC00607 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC00607 Gene

Publications for LINC00607 Gene

  1. Genome-wide association study of smoking behaviours among Bangladeshi adults. (PMID: 24665060) Argos M … Ahsan H (Journal of medical genetics 2014) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC00607 Gene

Sources for LINC00607 Gene